A C D E G L O R S V W
All Classes All Packages

A

AjaxTool - Class in org.helm.rest

AjaxTool() - Constructor for class org.helm.rest.AjaxTool

Application - Class in org.helm.rest

Application

Application() - Constructor for class org.helm.rest.Application

AsJSON() - Method in class org.helm.rest.Database

C

calculateCombined(String) - Method in class org.helm.rest.RestCalculation

calculateCombinedPost(String) - Method in class org.helm.rest.RestCalculation

calculateExtinctionCoefficient(String) - Method in class org.helm.rest.RestCalculation

calculateExtinctionCoefficientPost(String) - Method in class org.helm.rest.RestCalculation

calculateFingerprint(String) - Method in class org.helm.rest.RestCalculation

calculateFingerprintNaturalAnalogs(String) - Method in class org.helm.rest.RestCalculation

calculateFingerprintNaturalAnalogsPut(String) - Method in class org.helm.rest.RestCalculation

calculateFingerprintPut(String) - Method in class org.helm.rest.RestCalculation

calculateMolecularFormula(String) - Method in class org.helm.rest.RestCalculation

calculateMolecularFormulaPost(String) - Method in class org.helm.rest.RestCalculation

calculateMolecularWeight(String) - Method in class org.helm.rest.RestCalculation

calculateMolecularWeightPost(String) - Method in class org.helm.rest.RestCalculation

calculateSimilarity(String, String) - Method in class org.helm.rest.RestCalculation

calculateSimilarityNaturalAnalogs(String, String) - Method in class org.helm.rest.RestCalculation

calculateSimilarityNaturalAnalogsPut(String, String) - Method in class org.helm.rest.RestCalculation

calculateSimilarityPut(String, String) - Method in class org.helm.rest.RestCalculation

checkSubstructureRelationship(String, String) - Method in class org.helm.rest.RestCalculation

checkSubstructureRelationshipPut(String, String) - Method in class org.helm.rest.RestCalculation

CmdGet(HttpServletRequest) - Method in class org.helm.rest.AjaxTool

CmdPost(HttpServletRequest) - Method in class org.helm.rest.AjaxTool

convertHELMCanonical(String) - Method in class org.helm.rest.RestConversion

convertHELMCanonicalPost(String) - Method in class org.helm.rest.RestConversion

convertHELMStandard(String) - Method in class org.helm.rest.RestConversion

convertHELMStandardPost(String) - Method in class org.helm.rest.RestConversion

convertIntoPEPTIDEAnalogSequence(String) - Method in class org.helm.rest.RestFasta

convertIntoPEPTIDEAnalogSequencePost(String) - Method in class org.helm.rest.RestFasta

convertIntoRNAAnalogSequence(String) - Method in class org.helm.rest.RestFasta

convertIntoRNAAnalogSequencePost(String) - Method in class org.helm.rest.RestFasta

convertMolfile(String) - Method in class org.helm.rest.RestConversion

convertMolfilePost(String) - Method in class org.helm.rest.RestConversion

createJSON(String) - Method in class org.helm.rest.RestConversion

D

Database - Class in org.helm.rest

Database(String, String[]) - Constructor for class org.helm.rest.Database

DecodeBase64(String) - Static method in class org.helm.rest.Database

DelRecord(String) - Method in class org.helm.rest.Database

E

EncodeBase64(String) - Static method in class org.helm.rest.Database

G

generateCanSMILESForHELM(String) - Method in class org.helm.rest.RestSMILES

generateCanSMILESForHELMPost(String) - Method in class org.helm.rest.RestSMILES

generateFasta(String) - Method in class org.helm.rest.RestFasta

generateFastaPost(String) - Method in class org.helm.rest.RestFasta

generateHELMInput(String, String) - Method in class org.helm.rest.RestFasta

generateHELMInputPostPEPTIDE(String) - Method in class org.helm.rest.RestFasta

generateHELMInputPostRNA(String) - Method in class org.helm.rest.RestFasta

generateHELMPeptide(String) - Method in class org.helm.rest.ReadSequence

generateHELMRNA(String) - Method in class org.helm.rest.ReadSequence

generateImageForHELM(String) - Method in class org.helm.rest.RestImages

generateImageForHELMPost(String) - Method in class org.helm.rest.RestImages

generateImageForMonomer(String, String, boolean) - Method in class org.helm.rest.RestImages

generateImageForMonomerPost(String, String, boolean) - Method in class org.helm.rest.RestImages

generateSMILESForHELM(String) - Method in class org.helm.rest.RestSMILES

generateSMILESForHELMPost(String) - Method in class org.helm.rest.RestSMILES

getKeys() - Method in class org.helm.rest.Database

getVersion() - Method in class org.helm.rest.RestVersion

L

List(int, int, String, String, String, String, String, String) - Method in class org.helm.rest.Database

LoadRow(String) - Method in class org.helm.rest.Database

O

org.helm.rest - package org.helm.rest

R

ReadSequence - Class in org.helm.rest

ReadSequence class to read sequence and transform this in HELMNotation

ReadSequence() - Constructor for class org.helm.rest.ReadSequence

refreshMonomerCache() - Method in class org.helm.rest.RestRefresh

RestCalculation - Class in org.helm.rest

RestCalculation

RestCalculation() - Constructor for class org.helm.rest.RestCalculation

RestConversion - Class in org.helm.rest

RestConversion

RestConversion() - Constructor for class org.helm.rest.RestConversion

RestFasta - Class in org.helm.rest

RestFasta

RestFasta() - Constructor for class org.helm.rest.RestFasta

RestImages - Class in org.helm.rest

RestImages

RestImages() - Constructor for class org.helm.rest.RestImages

RestRefresh - Class in org.helm.rest

RestRefresh

RestRefresh() - Constructor for class org.helm.rest.RestRefresh

RestSMILES - Class in org.helm.rest

RestSMILES

RestSMILES() - Constructor for class org.helm.rest.RestSMILES

RestValidation - Class in org.helm.rest

RestValidation

RestValidation() - Constructor for class org.helm.rest.RestValidation

RestVersion - Class in org.helm.rest

Get the version number of the war file.

RestVersion() - Constructor for class org.helm.rest.RestVersion

S

Save() - Method in class org.helm.rest.Database

SaveRecord(String[]) - Method in class org.helm.rest.Database

V

validateInputHELM(String) - Method in class org.helm.rest.RestValidation

validateInputHELMPost(String) - Method in class org.helm.rest.RestValidation

validateSyntaxInputHELM(String) - Method in class org.helm.rest.RestValidation

validateSyntaxInputHELMPost(String) - Method in class org.helm.rest.RestValidation

W

wrapAjaxError(String) - Static method in class org.helm.rest.AjaxTool

wrapAjaxResult(ArrayList) - Static method in class org.helm.rest.AjaxTool

wrapAjaxResult(JSONObject) - Static method in class org.helm.rest.AjaxTool

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