org.helm.rest

Class RestFasta

java.lang.Object

org.helm.rest.RestFasta

@Path(value="/Fasta")
public class RestFasta
extends Object

RestFasta

Author:

hecht

Constructor Summary

Constructors

Constructor and Description
RestFasta()

Method Summary

Modifier and Type	Method and Description
javax.ws.rs.core.Response	convertIntoPEPTIDEAnalogSequence(String notation)
javax.ws.rs.core.Response	convertIntoPEPTIDEAnalogSequencePost(String helm)
javax.ws.rs.core.Response	convertIntoRNAAnalogSequence(String notation)
javax.ws.rs.core.Response	convertIntoRNAAnalogSequencePost(String helm)
javax.ws.rs.core.Response	generateFasta(String helmNotation)
javax.ws.rs.core.Response	generateFastaPost(String helm)
javax.ws.rs.core.Response	generateHELMInput(String peptide, String rna)
javax.ws.rs.core.Response	generateHELMInputPostPEPTIDE(String peptide)
javax.ws.rs.core.Response	generateHELMInputPostRNA(String rna)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RestFasta

public RestFasta()

Method Detail

generateFasta

@Path(value="/Produce/{c}")
 @GET
 @Produces(value="application/json")
 @Consumes(value="application/json")
public javax.ws.rs.core.Response generateFasta(@PathParam(value="c")
                                                                                                                                                               String helmNotation)

generateFastaPost

@Path(value="/Produce")
 @POST
 @Produces(value="application/json")
 @Consumes(value="application/x-www-form-urlencoded")
public javax.ws.rs.core.Response generateFastaPost(@FormParam(value="HELMNotation")
                                                                                                                                                                                 String helm)

generateHELMInput

@Path(value="/Read")
 @GET
 @Produces(value="application/json")
 @Consumes(value="application/json")
public javax.ws.rs.core.Response generateHELMInput(@QueryParam(value="PEPTIDE")
                                                                                                                                                            String peptide,
                                                                                                                                                            @QueryParam(value="RNA")
                                                                                                                                                            String rna)
                                                                                                                                                     throws org.helm.notation2.parser.exceptionparser.NotationException,
                                                                                                                                                            IOException,
                                                                                                                                                            org.jdom2.JDOMException,
                                                                                                                                                            org.helm.notation2.exception.ChemistryException

Throws:

org.helm.notation2.parser.exceptionparser.NotationException

IOException

org.jdom2.JDOMException

org.helm.notation2.exception.ChemistryException

generateHELMInputPostRNA

@Path(value="Read/RNA")
 @POST
 @Produces(value="application/json")
 @Consumes(value="application/x-www-form-urlencoded")
public javax.ws.rs.core.Response generateHELMInputPostRNA(@FormParam(value="RNA")
                                                                                                                                                                                        String rna)
                                                                                                                                                                                 throws org.helm.notation2.parser.exceptionparser.NotationException,
                                                                                                                                                                                        IOException,
                                                                                                                                                                                        org.jdom2.JDOMException,
                                                                                                                                                                                        org.helm.notation2.exception.ChemistryException

Throws:

org.helm.notation2.parser.exceptionparser.NotationException

IOException

org.jdom2.JDOMException

org.helm.notation2.exception.ChemistryException

generateHELMInputPostPEPTIDE

@Path(value="Read/PEPTIDE")
 @POST
 @Produces(value="application/json")
 @Consumes(value="application/x-www-form-urlencoded")
public javax.ws.rs.core.Response generateHELMInputPostPEPTIDE(@FormParam(value="PEPTIDE")
                                                                                                                                                                                                String peptide)
                                                                                                                                                                                         throws org.helm.notation2.exception.ChemistryException

Throws:

org.helm.notation2.exception.ChemistryException

convertIntoRNAAnalogSequence

@Path(value="/Convert/RNA/{c}")
 @GET
 @Produces(value="application/json")
 @Consumes(value="application/json")
public javax.ws.rs.core.Response convertIntoRNAAnalogSequence(@PathParam(value="c")
                                                                                                                                                                                  String notation)

convertIntoPEPTIDEAnalogSequence

@Path(value="/Convert/PEPTIDE/{c}")
 @GET
 @Produces(value="application/json")
 @Consumes(value="application/json")
public javax.ws.rs.core.Response convertIntoPEPTIDEAnalogSequence(@PathParam(value="c")
                                                                                                                                                                                          String notation)

convertIntoRNAAnalogSequencePost

@Path(value="/Convert/RNA")
 @POST
 @Produces(value="application/json")
 @Consumes(value="application/x-www-form-urlencoded")
public javax.ws.rs.core.Response convertIntoRNAAnalogSequencePost(@FormParam(value="HELMNotation")
                                                                                                                                                                                                    String helm)

convertIntoPEPTIDEAnalogSequencePost

@Path(value="/Convert/PEPTIDE")
 @POST
 @Produces(value="application/json")
 @Consumes(value="application/x-www-form-urlencoded")
public javax.ws.rs.core.Response convertIntoPEPTIDEAnalogSequencePost(@FormParam(value="HELMNotation")
                                                                                                                                                                                                            String helm)