org.helm.notation2.tools

Class Images

java.lang.Object

org.helm.notation2.tools.Images

public final class Images
extends Object

Image class to generate image generation of monomers and of the helm molecule

Author:

hecht

Method Summary

Modifier and Type	Method and Description
static byte[]	generateImageHELMMolecule(org.helm.notation2.parser.notation.HELM2Notation helm2notation) method to generate an image of the HELM molecule
static byte[]	generateImageofMonomer(Monomer monomer, boolean rgroupsInformation) generates an image of the atom/bond representation of monomer

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

generateImageofMonomer

public static byte[] generateImageofMonomer(Monomer monomer,
                                            boolean rgroupsInformation)
                                     throws BuilderMoleculeException,
                                            org.helm.chemtoolkit.CTKException,
                                            ChemistryException

generates an image of the atom/bond representation of monomer

Parameters:

monomer - Input Monomer

rgroupsInformation - information if the rgroups should be should or not

Returns:

an image of the monomer in byte[]

Throws:

org.helm.chemtoolkit.CTKException - general ChemToolKit exception passed to HELMToolKit

BuilderMoleculeException - if the molecule can't be built

ChemistryException - if the Chemistry Engine can not be initialized

generateImageHELMMolecule

public static byte[] generateImageHELMMolecule(org.helm.notation2.parser.notation.HELM2Notation helm2notation)
                                        throws BuilderMoleculeException,
                                               org.helm.chemtoolkit.CTKException,
                                               IOException,
                                               ChemistryException

method to generate an image of the HELM molecule

Parameters:

helm2notation - input HELMNotation

Returns:

the generated image in byte[]

Throws:

BuilderMoleculeException - if the HELM molecule can't be built

org.helm.chemtoolkit.CTKException - general ChemToolKit exception passed to HELMToolKit

IOException - IO Error

ChemistryException - if the Chemistry Engine can not initialized