Serialized Form

Package org.helm.notation2

Class org.helm.notation2.Attachment extends Object implements Serializable

Serialized Fields

alternateId

String alternateId

capGroupName

String capGroupName

capGroupSMILES

String capGroupSMILES

id

int id

label

String label

Class org.helm.notation2.Monomer extends Object implements Serializable

Serialized Fields

adHocMonomer

boolean adHocMonomer

alternateId

String alternateId

attachmentList

List<Attachment> attachmentList

canSMILES

String canSMILES

id

int id

molfile

String molfile

monomerType

String monomerType

name

String name

naturalAnalog

String naturalAnalog

newMonomer

boolean newMonomer

polymerType

String polymerType

Class org.helm.notation2.MonomerCache extends Object implements Serializable

Serialized Fields

attachmentDB

Map<String,Attachment> attachmentDB

monomerDB

Map<String,Map<String,Monomer>> monomerDB

smilesMonomerDB

Map<String,Monomer> smilesMonomerDB

Class org.helm.notation2.Nucleotide extends Object implements Serializable

Serialized Fields

modified

boolean modified

naturalAnalog

String naturalAnalog

notation

String notation

positionType

int positionType

symbol

String symbol

Package org.helm.notation2.exception

Class org.helm.notation2.exception.AnalogSequenceException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.AttachmentException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.BuilderMoleculeException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.CalculationException extends Exception implements Serializable

Class org.helm.notation2.exception.ChemistryException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ConnectionNotationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.EncoderException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ExtinctionCoefficientException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.FastaFormatException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.GroupingNotationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.HELM1FormatException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.HELM2HandledException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ImageGenerationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.MonomerException extends Exception implements Serializable

Class org.helm.notation2.exception.MonomerLoadingException extends IOException implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.NotationException extends Exception implements Serializable

Class org.helm.notation2.exception.NucleotideLoadingException extends IOException implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ParserException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.PeptideUtilsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.PolymerIDsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.RNAUtilsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ValidationException extends Exception implements Serializable

serialVersionUID:

1L