Package org.helm.notation2.tools

Class xHelmNotationExporter

java.lang.Object

org.helm.notation2.tools.xHelmNotationExporter

public final class xHelmNotationExporter
extends Object

xHELMNotationExporter

Author:

hecht

Field Summary

Fields

Modifier and Type	Field	Description
static String	HELM_NOTATION_ELEMENT
static String	MONOMER_ELEMENT
static String	MONOMER_LIST_ELEMENT
static String	XHELM_ELEMENT

Method Summary

Modifier and Type	Method	Description
static String	getXHELM(org.helm.notation2.parser.notation.HELM2Notation helm2notation)	method to get xhelm for the helm notation, only if it was possible to convert the helm in the old format
static String	getXHELM2(org.helm.notation2.parser.notation.HELM2Notation helm2notation)	method to get xhelm for the helm2 notation with the new functionality

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

XHELM_ELEMENT

public static final String XHELM_ELEMENT

See Also:

Constant Field Values

MONOMER_LIST_ELEMENT

public static final String MONOMER_LIST_ELEMENT

See Also:

Constant Field Values

MONOMER_ELEMENT

public static final String MONOMER_ELEMENT

See Also:

Constant Field Values

HELM_NOTATION_ELEMENT

public static final String HELM_NOTATION_ELEMENT

See Also:

Constant Field Values

Method Details

getXHELM2

public static String getXHELM2(org.helm.notation2.parser.notation.HELM2Notation helm2notation) throws MonomerException, IOException, org.jdom2.JDOMException, ChemistryException

method to get xhelm for the helm2 notation with the new functionality

Parameters:

helm2notation - , HELM2Notation object

Returns:

xhelm

Throws:

MonomerException - if monomer is not valid

org.jdom2.JDOMException - jdome error

IOException - IO error

ChemistryException - if chemistry engine can not be initialized

getXHELM

public static String getXHELM(org.helm.notation2.parser.notation.HELM2Notation helm2notation) throws MonomerException, HELM1FormatException, IOException, org.jdom2.JDOMException, NotationException, org.helm.chemtoolkit.CTKException, ValidationException, ChemistryException

method to get xhelm for the helm notation, only if it was possible to convert the helm in the old format

Parameters:

helm2notation - , HELM2Notation object

Returns:

xhelm

Throws:

MonomerException - if monomer is not valid

HELM1FormatException - if HELM input contains HELM2 features

org.jdom2.JDOMException - jdome error

IOException - IO error

NotationException - if notation is not valid

org.helm.chemtoolkit.CTKException - general ChemToolKit exception passed to HELMToolKit

ValidationException - if helm2 notation is not valid

ChemistryException - if the Chemistry Engine can not be initialized