Uses of Class
org.helm.notation2.MonomerStore

Packages that use MonomerStore

Package	Description
org.helm.notation2
org.helm.notation2.tools

Uses of MonomerStore in org.helm.notation2

Fields in org.helm.notation2 declared as MonomerStore

Modifier and Type	Field	Description
protected MonomerStore	MonomerFactory.monomerStore

Methods in org.helm.notation2 that return MonomerStore

Modifier and Type	Method	Description
MonomerStore	MonomerFactory.getMonomerStore()	create a MonomerStore instance based on MonomerFactory's monomerDB and smilesMonomerDB

Methods in org.helm.notation2 with parameters of type MonomerStore

Modifier and Type	Method	Description
Monomer	Nucleotide.getBaseMonomer(MonomerStore monomerStore)	get the base monomer, the return value could be null if this nucleotide does not have a base
String	Nucleotide.getNaturalAnalog(MonomerStore monomerStore)	return the natural analog of this nucleotide
Monomer	Nucleotide.getPhosphateMonomer(MonomerStore monomerStore)	return the phosphate monomer of this nucleotide
Monomer	Nucleotide.getSugarMonomer(MonomerStore monomerStore)	get the sugar monomer, the return value could be null if the "nucleotide" does not has a sugar

Uses of MonomerStore in org.helm.notation2.tools

Methods in org.helm.notation2.tools that return MonomerStore

Modifier and Type	Method	Description
static MonomerStore	xHelmNotationParser.getMonomerStore(org.jdom2.Element rootElement)	Generates the monomer store from a given XHELM document