Serialized Form

Package org.helm.notation2

Class org.helm.notation2.Attachment extends Object implements Serializable

Serialized Fields

id

int id

alternateId

String alternateId

label

String label

capGroupName

String capGroupName

capGroupSMILES

String capGroupSMILES

Class org.helm.notation2.Monomer extends Object implements Serializable

Serialized Fields

id

int id

alternateId

String alternateId

naturalAnalog

String naturalAnalog

name

String name

canSMILES

String canSMILES

molfile

String molfile

monomerType

String monomerType

polymerType

String polymerType

attachmentList

List<E> attachmentList

newMonomer

boolean newMonomer

adHocMonomer

boolean adHocMonomer

Class org.helm.notation2.MonomerCache extends Object implements Serializable

Serialized Fields

monomerDB

Map<K,V> monomerDB

attachmentDB

Map<K,V> attachmentDB

smilesMonomerDB

Map<K,V> smilesMonomerDB

Class org.helm.notation2.Nucleotide extends Object implements Serializable

Serialized Fields

positionType

int positionType

symbol

String symbol

modified

boolean modified

notation

String notation

naturalAnalog

String naturalAnalog

Package org.helm.notation2.exception

Class org.helm.notation2.exception.AnalogSequenceException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.AttachmentException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.BuilderMoleculeException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.CalculationException extends Exception implements Serializable

Class org.helm.notation2.exception.ChemistryException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ConnectionNotationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.EncoderException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ExtinctionCoefficientException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.FastaFormatException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.GroupingNotationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.HELM1FormatException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.HELM2HandledException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ImageGenerationException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.MonomerException extends Exception implements Serializable

Class org.helm.notation2.exception.MonomerLoadingException extends IOException implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.NotationException extends Exception implements Serializable

Class org.helm.notation2.exception.NucleotideLoadingException extends IOException implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ParserException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.PeptideUtilsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.PolymerIDsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.RNAUtilsException extends Exception implements Serializable

serialVersionUID:

1L

Class org.helm.notation2.exception.ValidationException extends Exception implements Serializable

serialVersionUID:

1L