Uses of Class
org.helm.notation2.exception.ValidationException

Packages that use ValidationException

Package	Description
org.helm.notation2.tools

Uses of ValidationException in org.helm.notation2.tools

Methods in org.helm.notation2.tools that throw ValidationException

Modifier and Type	Method and Description
Float	WebService.calculateExtinctionCoefficient(String notation) method to calculate from a non-ambiguous HELM string the extinction coefficient
Double	WebService.calculateMolecularWeight(String notation) method to calculate from a non-ambiguous HELM input the molecular weight
String	WebService.convertIntoStandardHELM(String notation) method to convert the input HELM into a standard HELM
String	WebService.convertStandardHELMToCanonicalHELM(String notation) method to convert the input HELM into canonical HELM
String	WebService.generateCanSMILESForHELM2(String notation) method to generate a SMILES representation for a whole HELM2 input
String	WebService.generateFasta(String notation) method to generate FASTA-Formats for all rna and peptide sequences from an HELM input
byte[]	WebService.generateImageForHELMMolecule(String notation) method to generate a HELM molecule
String	WebService.generateJSON(String helm) method to generate JSON-Output for the HELM
String	WebService.generateNaturalAnalogSequencePeptide(String notation) method to generate the natural analogue sequence for all peptide-sequences from an HELM input
String	WebService.generateNaturalAnalogSequenceRNA(String notation) method to generate the natural analogue sequence for all rna-sequences from an HELM input
String	WebService.generateSMILESForHELM2(String notation) method to generate a SMILES representation for a whole HELM2 input
String	WebService.getMolecularFormula(String notation) method to calculate from a non-ambiguous HELM input the molecular formula
List<String>	WebService.getMolecularProperties(String notation) method to calculate froma non-ambiguous HELM input the molecular properties: molecular formula, molecular weight, exact mass, extinction coefficient
static String	HELM1Utils.getStandard(org.helm.notation2.parser.notation.HELM2Notation helm2notation) method to reproduce a standard HELM in HELM1 - Format
static String	xHelmNotationExporter.getXHELM(org.helm.notation2.parser.notation.HELM2Notation helm2notation) method to get xhelm for the helm notation, only if it was possible to convert the helm in the old format
void	WebService.validateHELM(String helm) method to validate the input HELM-String