Uses of Class
org.helm.notation2.Nucleotide

Packages that use Nucleotide

Package	Description
org.helm.notation2
org.helm.notation2.tools
org.helm.notation2.wsadapter

Uses of Nucleotide in org.helm.notation2

Methods in org.helm.notation2 that return Nucleotide

Modifier and Type	Method and Description
static Nucleotide	DeepCopy.copy(Nucleotide nucleotide)
static Nucleotide	Nucleotide.fromJSON(String json)

Methods in org.helm.notation2 with parameters of type Nucleotide

Modifier and Type	Method and Description
static Nucleotide	DeepCopy.copy(Nucleotide nucleotide)

Uses of Nucleotide in org.helm.notation2.tools

Methods in org.helm.notation2.tools that return Nucleotide

Modifier and Type	Method and Description
static Nucleotide	NucleotideParser.convertToNucleotide(String id, boolean last) method to convert an string to an nucleotide
static Nucleotide	NucleotideParser.getNucleotide(org.jdom2.Element nucleotideElement)
static Nucleotide	NucleotideParser.getNucleotide(String nucleotideXML)

Methods in org.helm.notation2.tools that return types with arguments of type Nucleotide

Modifier and Type	Method and Description
static List<Nucleotide>	RNAUtils.getNucleotideList(org.helm.notation2.parser.notation.polymer.PolymerNotation polymer) method to get all nucleotides for one polymer

Uses of Nucleotide in org.helm.notation2.wsadapter

Methods in org.helm.notation2.wsadapter with parameters of type Nucleotide

Modifier and Type	Method and Description
String	NucleotideWSSaver.saveNucleotideToStore(Nucleotide nucleotide) Adds or updates a single nucleotide to the nucleotide store using the URL configured in MonomerStoreConfiguration.