org.helm.notation2.tools

Class xHelmNotationParser

java.lang.Object

org.helm.notation2.tools.xHelmNotationParser

public class xHelmNotationParser
extends Object

Class to parse the XHELM XML format

Author:

maisel

Constructor Summary

Constructors

Constructor and Description
xHelmNotationParser()

Method Summary

Methods

Modifier and Type	Method and Description
static String	getComplexNotationString(org.jdom2.Element rootElement) Extracts the complex notation string from the root node of the XHELM document
static String	getHELMNotationString(org.jdom2.Element rootElement) Extracts the HELM string from the root node of the XHELM document
static MonomerStore	getMonomerStore(org.jdom2.Element rootElement) Generates the monomer store from a given XHELM document

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

xHelmNotationParser

public xHelmNotationParser()

Method Detail

getHELMNotationString

public static String getHELMNotationString(org.jdom2.Element rootElement)

Extracts the HELM string from the root node of the XHELM document

Parameters:

rootElement - root element

Returns:

the complex notation string

getComplexNotationString

public static String getComplexNotationString(org.jdom2.Element rootElement)

Extracts the complex notation string from the root node of the XHELM document

Parameters:

rootElement - root element

Returns:

the complex notation string

getMonomerStore

public static MonomerStore getMonomerStore(org.jdom2.Element rootElement)
                                    throws MonomerException,
                                           IOException

Generates the monomer store from a given XHELM document

Parameters:

rootElement - root element

Returns:

a monomer store

Throws:

MonomerException - if monomer is not valid

IOException - IO error