A B C D G I O R S U V

A

addIBase(IChemObjectBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

B

bindAtoms(IAtomBase, IAtomBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

bond - Variable in class org.helm.chemtoolkit.chemaxon.ChemStereoElement

C

canonicalize(String) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

changeAtomLabel(int, int) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

ChemAtom - Class in org.helm.chemtoolkit.chemaxon

ChemAtom(MolAtom) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemAtom

CHEMAXON_EXTENDEND_SMILES_FORMAT - Static variable in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

ChemaxonManipulator - Class in org.helm.chemtoolkit.chemaxon

ChemaxonManipulator() - Constructor for class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

ChemBond - Class in org.helm.chemtoolkit.chemaxon

ChemBond(MolBond) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemBond

ChemBond(MolBond, IStereoElementBase) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemBond

ChemMolecule - Class in org.helm.chemtoolkit.chemaxon

ChemMolecule(Molecule) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemMolecule

ChemMolecule(Molecule, AttachmentList) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemMolecule

ChemObject - Class in org.helm.chemtoolkit.chemaxon

ChemObject(CEdge) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemObject

ChemStereoElement - Class in org.helm.chemtoolkit.chemaxon

ChemStereoElement TODO comment me

ChemStereoElement(MolBond) - Constructor for class org.helm.chemtoolkit.chemaxon.ChemStereoElement

clone() - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

cloneMolecule() - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

compare(Object) - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

convert(String, AbstractChemistryManipulator.StType) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

convertMolecule(AbstractMolecule, AbstractChemistryManipulator.StType) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

D

dearomatize() - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

G

generateCoordinates(int) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

getIAtno() - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

getIAtom1() - Method in class org.helm.chemtoolkit.chemaxon.ChemBond

getIAtom2() - Method in class org.helm.chemtoolkit.chemaxon.ChemBond

getIBond(int) - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

getIBondArray() - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

getIBondCount() - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

getMolAtom() - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

getMolBond() - Method in class org.helm.chemtoolkit.chemaxon.ChemBond

getMolecule(String, AttachmentList) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

getMolecule() - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

getMoleculeInfo(AbstractMolecule) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

getRgroup() - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

getRgroups() - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

getStereoElement() - Method in class org.helm.chemtoolkit.chemaxon.ChemBond

getStereoElement() - Method in class org.helm.chemtoolkit.chemaxon.ChemStereoElement

getStereoInformation(AbstractMolecule, IAtomBase, IAtomBase, IAtomBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

getType() - Method in class org.helm.chemtoolkit.chemaxon.ChemBond

I

isSingleStereo(IAtomBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

O

org.helm.chemtoolkit.chemaxon - package org.helm.chemtoolkit.chemaxon

R

removeIBase(IChemObjectBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

removeINode(IAtomBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemMolecule

renderMol(String, AbstractChemistryManipulator.OutputType, int, int, int) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

renderSequence(String, AbstractChemistryManipulator.OutputType, int, int, int) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

S

setRgroup(int) - Method in class org.helm.chemtoolkit.chemaxon.ChemAtom

setStereoInformation(AbstractMolecule, IAtomBase, AbstractMolecule, IAtomBase, IAtomBase, IAtomBase) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

SMILES_FORMAT - Static variable in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

U

UNIQUE_SMILES_FORMAT - Static variable in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

V

validateSMILES(String) - Method in class org.helm.chemtoolkit.chemaxon.ChemaxonManipulator

A B C D G I O R S U V