org.micromanager.remote

Class XYTiledRemoteAcquisition

java.lang.Object

org.micromanager.acqj.main.Acquisition

org.micromanager.acqj.main.XYTiledAcquisition

org.micromanager.remote.XYTiledRemoteAcquisition

All Implemented Interfaces:

org.micromanager.acqj.api.AcquisitionAPI, org.micromanager.acqj.api.XYTiledAcquisitionAPI, org.micromanager.ndviewer.api.NDViewerAcqInterface, PycroManagerCompatibleAcq

public class XYTiledRemoteAcquisition
extends org.micromanager.acqj.main.XYTiledAcquisition
implements org.micromanager.acqj.api.AcquisitionAPI, org.micromanager.ndviewer.api.NDViewerAcqInterface, PycroManagerCompatibleAcq

XYTiled acquisition that accepts events froma remote source Class that serves as the java counterpart to a python acquisition

Author:

henrypinkard

Field Summary

Fields inherited from class org.micromanager.acqj.main.XYTiledAcquisition

pixelStageTranslator_, zAxes_

Fields inherited from class org.micromanager.acqj.main.Acquisition

abortRequested_, core_, dataSink_, debugMode_, eventsFinished_, firstDequeue_, slm_, started_, summaryMetadata_, xyStage_, zStage_

Fields inherited from interface org.micromanager.acqj.api.AcquisitionAPI

AFTER_CAMERA_HOOK, AFTER_EXPOSURE_HOOK, AFTER_HARDWARE_HOOK, BEFORE_HARDWARE_HOOK, EVENT_GENERATION_HOOK

Constructor Summary

Constructors

Constructor and Description
XYTiledRemoteAcquisition(RemoteEventSource eventSource, org.micromanager.remote.RemoteViewerStorageAdapter sink, boolean debug)

Method Summary

Modifier and Type	Method and Description
void	abort()
void	abort(Exception e)
int	getEventPort() Get the port over which the acquisition accepts acquisition events, or -1 if this is not available
org.micromanager.acqj.util.xytiling.CameraTilingStageTranslator	getPixelStageTranslator()
org.micromanager.ndtiffstorage.NDTiffAPI	getStorage()
boolean	isFinished()

Methods inherited from class org.micromanager.acqj.main.XYTiledAcquisition

getZAxes, getZDeviceNames, getZOrigin, getZStep, initialize

Methods inherited from class org.micromanager.acqj.main.Acquisition

addHook, addImageMetadataProcessor, addImageProcessor, addTagsToTaggedImage, addToImageMetadata, addToOutput, anythingAcquired, areEventsFinished, checkForExceptions, finish, getAfterCameraHooks, getAfterExposureHooks, getAfterHardwareHooks, getBeforeHardwareHooks, getDataSink, getEventGenerationHooks, getImageTransferQueueCount, getImageTransferQueueSize, getStartTime_ms, getSummaryMetadata, isAbortRequested, isDebugMode, isPaused, isStarted, markEventsFinished, setDebugMode, setPaused, setStartTime_ms, start, submitEventIterator, waitForCompletion

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.micromanager.acqj.api.AcquisitionAPI

addHook, addImageMetadataProcessor, addImageProcessor, anythingAcquired, areEventsFinished, checkForExceptions, finish, getDataSink, getSummaryMetadata, isAbortRequested, isDebugMode, isPaused, isStarted, setDebugMode, setPaused, start, submitEventIterator, waitForCompletion

Methods inherited from interface org.micromanager.ndviewer.api.NDViewerAcqInterface

isPaused, setPaused, waitForCompletion

Constructor Detail

XYTiledRemoteAcquisition

public XYTiledRemoteAcquisition(RemoteEventSource eventSource,
                                org.micromanager.remote.RemoteViewerStorageAdapter sink,
                                boolean debug)

Method Detail

getStorage

public org.micromanager.ndtiffstorage.NDTiffAPI getStorage()

Specified by:

getStorage in interface PycroManagerCompatibleAcq

getEventPort

public int getEventPort()

Description copied from interface: PycroManagerCompatibleAcq

Get the port over which the acquisition accepts acquisition events, or -1 if this is not available

Specified by:

getEventPort in interface PycroManagerCompatibleAcq

Returns:

abort

public void abort()

Specified by:

abort in interface org.micromanager.acqj.api.AcquisitionAPI

Specified by:

abort in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

Overrides:

abort in class org.micromanager.acqj.main.Acquisition

abort

public void abort(Exception e)

Specified by:

abort in interface org.micromanager.acqj.api.AcquisitionAPI

Overrides:

abort in class org.micromanager.acqj.main.Acquisition

isFinished

public boolean isFinished()

Specified by:

isFinished in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

getPixelStageTranslator

public org.micromanager.acqj.util.xytiling.CameraTilingStageTranslator getPixelStageTranslator()

Specified by:

getPixelStageTranslator in interface org.micromanager.acqj.api.XYTiledAcquisitionAPI

Overrides:

getPixelStageTranslator in class org.micromanager.acqj.main.XYTiledAcquisition