Package org.geneontology.obographs.core.model

Class Graph

  • @ParametersAreNonnullByDefault
@Generated("org.immutables.processor.ProxyProcessor")
@Immutable
@CheckReturnValue
public final class Graph
extends AbstractGraph
    A graph object holds a collection of nodes and edges Corresponds to a Named Graph in RDF, and an Ontology in OWL Note: there is no assumption that either nodes or edges are unique to a graph ## Basic OBO Graphs ![Node UML](node-bog.png) *
    Author:
    cjm

    • Method Detail

      • getNodes

        public com.google.common.collect.ImmutableList<Node> getNodes()
        Specified by:
        getNodes in class AbstractGraph
        Returns:
        the nodes

      • getEdges

        public com.google.common.collect.ImmutableList<Edge> getEdges()
        Specified by:
        getEdges in class AbstractGraph
        Returns:
        the edges

      • withId

        public final Graph withId​(String value)
        Copy the current immutable object by setting a value for the id attribute. An equals check used to prevent copying of the same value by returning this.
        Parameters:
        value - A new value for id
        Returns:
        A modified copy of the this object

      • withLbl

        public final Graph withLbl​(String value)
        Copy the current immutable object by setting a value for the lbl attribute. An equals check used to prevent copying of the same value by returning this.
        Parameters:
        value - A new value for lbl
        Returns:
        A modified copy of the this object

      • withMeta

        public final Graph withMeta​(@Nullable
                            Meta value)
        Copy the current immutable object by setting a value for the meta attribute. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        value - A new value for meta (can be null)
        Returns:
        A modified copy of the this object

      • withNodes

        public final Graph withNodes​(Node... elements)
        Copy the current immutable object with elements that replace the content of nodes.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withNodes

        public final Graph withNodes​(Iterable<? extends Node> elements)
        Copy the current immutable object with elements that replace the content of nodes. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of nodes elements to set
        Returns:
        A modified copy of this object

      • withEdges

        public final Graph withEdges​(Edge... elements)
        Copy the current immutable object with elements that replace the content of edges.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withEdges

        public final Graph withEdges​(Iterable<? extends Edge> elements)
        Copy the current immutable object with elements that replace the content of edges. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of edges elements to set
        Returns:
        A modified copy of this object

      • withEquivalentNodesSets

        public final Graph withEquivalentNodesSets​(EquivalentNodesSet... elements)
        Copy the current immutable object with elements that replace the content of equivalentNodesSets.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withEquivalentNodesSets

        public final Graph withEquivalentNodesSets​(Iterable<? extends EquivalentNodesSet> elements)
        Copy the current immutable object with elements that replace the content of equivalentNodesSets. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of equivalentNodesSets elements to set
        Returns:
        A modified copy of this object

      • withLogicalDefinitionAxioms

        public final Graph withLogicalDefinitionAxioms​(LogicalDefinitionAxiom... elements)
        Copy the current immutable object with elements that replace the content of logicalDefinitionAxioms.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withLogicalDefinitionAxioms

        public final Graph withLogicalDefinitionAxioms​(Iterable<? extends LogicalDefinitionAxiom> elements)
        Copy the current immutable object with elements that replace the content of logicalDefinitionAxioms. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of logicalDefinitionAxioms elements to set
        Returns:
        A modified copy of this object

      • withDomainRangeAxioms

        public final Graph withDomainRangeAxioms​(DomainRangeAxiom... elements)
        Copy the current immutable object with elements that replace the content of domainRangeAxioms.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withDomainRangeAxioms

        public final Graph withDomainRangeAxioms​(Iterable<? extends DomainRangeAxiom> elements)
        Copy the current immutable object with elements that replace the content of domainRangeAxioms. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of domainRangeAxioms elements to set
        Returns:
        A modified copy of this object

      • withPropertyChainAxioms

        public final Graph withPropertyChainAxioms​(PropertyChainAxiom... elements)
        Copy the current immutable object with elements that replace the content of propertyChainAxioms.
        Parameters:
        elements - The elements to set
        Returns:
        A modified copy of this object

      • withPropertyChainAxioms

        public final Graph withPropertyChainAxioms​(Iterable<? extends PropertyChainAxiom> elements)
        Copy the current immutable object with elements that replace the content of propertyChainAxioms. A shallow reference equality check is used to prevent copying of the same value by returning this.
        Parameters:
        elements - An iterable of propertyChainAxioms elements to set
        Returns:
        A modified copy of this object

      • equals

        public boolean equals​(@Nullable
                      Object another)
        This instance is equal to all instances of Graph that have equal attribute values.
        Overrides:
        equals in class Object
        Returns:
        true if this is equal to another instance

      • hashCode

        public int hashCode()
        Computes a hash code from attributes: id, lbl, meta, nodes, edges, equivalentNodesSets, logicalDefinitionAxioms, domainRangeAxioms, propertyChainAxioms.
        Overrides:
        hashCode in class Object
        Returns:
        hashCode value

      • toString

        public String toString()
        Prints the immutable value Graph with attribute values.
        Overrides:
        toString in class Object
        Returns:
        A string representation of the value

      • copyOf

        public static Graph copyOf​(AbstractGraph instance)
        Creates an immutable copy of a AbstractGraph value. Uses accessors to get values to initialize the new immutable instance. If an instance is already immutable, it is returned as is.
        Parameters:
        instance - The instance to copy
        Returns:
        A copied immutable Graph instance