All Classes

Class	Description
AbstractBasicPropertyValue	A generic PropertyValue that is not explicitly modeled
AbstractDefinitionPropertyValue	A PropertyValue that represents a textual definition of an ontology class or property
AbstractDomainRangeAxiom	This combined ObjectPropertyDomain, ObjectPropertyRange, and some AllValuesFrom expressions into a single convenience structure
AbstractEdge	An edge connects two nodes via a predicate
AbstractEquivalentNodesSet	A set of nodes that all stand in a mutual equivalence or identity relationship to one another Corresponds to Node in the OWLAPI
AbstractExistentialRestrictionExpression	Corresponds to an axiom of the form C = X1 and ...
AbstractGraph	A graph object holds a collection of nodes and edges Corresponds to a Named Graph in RDF, and an Ontology in OWL Note: there is no assumption that either nodes or edges are unique to a graph ## Basic OBO Graphs  *
AbstractGraphDocument	Holds a collection of graphs, plus document-level metadata ## Model 
AbstractLogicalDefinitionAxiom	Corresponds to an axiom of the form C = X1 and ...
AbstractMeta	A holder for metadata The information in a Meta object consists sets of PropertyValue objects, which associate the Meta object holder with some value via some property.
AbstractNode	A graph node corresponds to a class, individual or property 
AbstractNode.RDFTYPES
AbstractPropertyChainAxiom	P <- P1 ...
AbstractSynonymPropertyValue	A PropertyValue that represents a an alternative term for a node
AbstractSynonymPropertyValue.SCOPES	OBO-style synonym scopes
AbstractXrefPropertyValue
Axiom
BasicPropertyValue	A generic PropertyValue that is not explicitly modeled
BasicPropertyValue.Builder	Builds instances of type BasicPropertyValue.
DefinitionPropertyValue	A PropertyValue that represents a textual definition of an ontology class or property
DefinitionPropertyValue.Builder	Builds instances of type DefinitionPropertyValue.
DomainRangeAxiom	This combined ObjectPropertyDomain, ObjectPropertyRange, and some AllValuesFrom expressions into a single convenience structure
DomainRangeAxiom.Builder	Builds instances of type DomainRangeAxiom.
Edge	An edge connects two nodes via a predicate
Edge.Builder	Builds instances of type Edge.
EquivalentNodesSet	A set of nodes that all stand in a mutual equivalence or identity relationship to one another Corresponds to Node in the OWLAPI
EquivalentNodesSet.Builder	Builds instances of type EquivalentNodesSet.
ExistentialRestrictionExpression	Corresponds to an axiom of the form C = X1 and ...
ExistentialRestrictionExpression.Builder	Builds instances of type ExistentialRestrictionExpression.
Expression
Graph	A graph object holds a collection of nodes and edges Corresponds to a Named Graph in RDF, and an Ontology in OWL Note: there is no assumption that either nodes or edges are unique to a graph ## Basic OBO Graphs  *
Graph.Builder	Builds instances of type Graph.
GraphDocument	Holds a collection of graphs, plus document-level metadata ## Model 
GraphDocument.Builder	Builds instances of type GraphDocument.
LogicalDefinitionAxiom	Corresponds to an axiom of the form C = X1 and ...
LogicalDefinitionAxiom.Builder	Builds instances of type LogicalDefinitionAxiom.
Meta	A holder for metadata The information in a Meta object consists sets of PropertyValue objects, which associate the Meta object holder with some value via some property.
Meta.Builder	Builds instances of type Meta.
Node	A graph node corresponds to a class, individual or property 
Node.Builder	Builds instances of type Node.
NodeOrEdge
OboGraph
OgJsonGenerator
OgJsonReader
OgSchemaGenerator
OgYamlGenerator
OgYamlReader
PropertyChainAxiom	P <- P1 ...
PropertyChainAxiom.Builder	Builds instances of type PropertyChainAxiom.
PropertyValue	Associates the container object with a value via a property.
SynonymPropertyValue	A PropertyValue that represents a an alternative term for a node
SynonymPropertyValue.Builder	Builds instances of type SynonymPropertyValue.
XrefPropertyValue	Immutable implementation of AbstractXrefPropertyValue.
XrefPropertyValue.Builder	Builds instances of type XrefPropertyValue.