A B C D E F G H I J K L M N O P R S T U V W Z

A

AbsoluteTimeUnitMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

AbsoluteTimeUnitMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.AbsoluteTimeUnitMixin

AbstractConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

ABSTRACTED_FROM - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

abstractedFrom - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

AbstractNodeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.util

AbstractNodeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.util.AbstractNodeVisitor

AbstractPropositionFinder<K> - Class in edu.emory.cci.aiw.cvrg.eureka.services.finder

AbstractPropositionFinder(PropositionRetriever<K>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.finder.AbstractPropositionFinder

AbstractValueThresholdGroupEntityConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

accept(PhenotypeEntityVisitor) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionEntityVisitable

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

accept(PhenotypeEntityVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

addPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

addRole(AuthorizedRoleEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

AnalyticsServiceRoleDao - Interface in edu.emory.cci.aiw.cvrg.eureka.services.dao

AppProperties - Class in edu.emory.cci.aiw.cvrg.eureka.services.comm

AppProperties() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Constructor.

AppPropertiesLinks - Class in edu.emory.cci.aiw.cvrg.eureka.services.comm

AppPropertiesLinks() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesLinks

Constructor.

AppPropertiesModes - Class in edu.emory.cci.aiw.cvrg.eureka.services.comm

AppPropertiesModes() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesModes

Constructor.

AppPropertiesRegistration - Class in edu.emory.cci.aiw.cvrg.eureka.services.comm

AppPropertiesRegistration() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesRegistration

Constructor.

AppPropertyResource - Class in edu.emory.cci.aiw.cvrg.eureka.services.resource

AppPropertyResource(ServiceProperties) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.resource.AppPropertyResource

asValue(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

asValue(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

asValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

asValueCompString(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

asValueCompString(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

asValueCompString(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

asValueString(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

asValueString(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

asValueString(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

AttributeMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

AttributeMixin(String, Value) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.AttributeMixin

AuthorizedRoleEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

A bean class to hold information related to roles in the system.

AuthorizedRoleEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Create an empty role.

AuthorizedRoleEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

AuthorizedRoleEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

AuthorizedUserDao - Interface in edu.emory.cci.aiw.cvrg.eureka.services.dao

A data access object interface for working with AuthorizedUserEntity objects in the data store.

AuthorizedUserEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

A bean class to hold information about users in the system.

AuthorizedUserEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

Create an empty User object.

AuthorizedUserEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

AuthorizedUserEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

B

BooleanValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

BooleanValueMixin(Boolean) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.BooleanValueMixin

C

CategorizationConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

CategorizationConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.CategorizationConverter

CATEGORY_TYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

CategoryEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

CategoryEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

CategoryEntity.CategoryType - Enum in edu.emory.cci.aiw.cvrg.eureka.services.entity

CategoryEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

CategoryEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity_

categoryType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

complement - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

COMPLEMENT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

CompoundLowLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

CompoundLowLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.CompoundLowLevelAbstractionJsonDeserializer

CompoundLowLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

CompoundLowLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.CompoundLowLevelAbstractionJsonSerializer

ConfigListener - Class in edu.emory.cci.aiw.cvrg.eureka.services.config

Set up the Guice dependency injection engine.

ConfigListener() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.config.ConfigListener

consecutive - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

CONSECUTIVE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

ConstantMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

ConstantMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ConstantMixin

ContextDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

ContextDefinitionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ContextDefinitionMixin

contextInitialized(ServletContextEvent) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ConfigListener

ConversionSupport - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

ConversionSupport() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

convert(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.CategorizationConverter

convert(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyNotValueThresholdConverter

convert(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyValueThresholdConverter

convert(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.SystemPropositionConverter

convert(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsCompoundLowLevelAbstractionConverter

convert(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsLowLevelAbstractionConverter

count - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

COUNT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

created - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

CREATED - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

D

DEFAULT_ROLE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

defaultRole - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

DefaultSourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

DefaultSourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.DefaultSourceIdMixin

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

description - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.CompoundLowLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.HighLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.LowLevelAbstractionJsonDeserializer

deserialize(JsonParser, DeserializationContext) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.SliceAbstractionJsonDeserializer

DestinationToEtlDestinationVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

DestinationToEtlDestinationVisitor(ConversionSupport) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

DISPLAY_NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

displayName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

E

edu.emory.cci.aiw.cvrg.eureka.services.comm - package edu.emory.cci.aiw.cvrg.eureka.services.comm

edu.emory.cci.aiw.cvrg.eureka.services.config - package edu.emory.cci.aiw.cvrg.eureka.services.config

edu.emory.cci.aiw.cvrg.eureka.services.conversion - package edu.emory.cci.aiw.cvrg.eureka.services.conversion

This package implements conversion of Eureka! derived phenotypes to Protempa proposition definitions.

edu.emory.cci.aiw.cvrg.eureka.services.dao - package edu.emory.cci.aiw.cvrg.eureka.services.dao

edu.emory.cci.aiw.cvrg.eureka.services.entity - package edu.emory.cci.aiw.cvrg.eureka.services.entity

edu.emory.cci.aiw.cvrg.eureka.services.finder - package edu.emory.cci.aiw.cvrg.eureka.services.finder

edu.emory.cci.aiw.cvrg.eureka.services.json - package edu.emory.cci.aiw.cvrg.eureka.services.json

edu.emory.cci.aiw.cvrg.eureka.services.props - package edu.emory.cci.aiw.cvrg.eureka.services.props

edu.emory.cci.aiw.cvrg.eureka.services.resource - package edu.emory.cci.aiw.cvrg.eureka.services.resource

edu.emory.cci.aiw.cvrg.eureka.services.translation - package edu.emory.cci.aiw.cvrg.eureka.services.translation

edu.emory.cci.aiw.cvrg.eureka.services.util - package edu.emory.cci.aiw.cvrg.eureka.services.util

equals(Object) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

EtlClientProvider - Class in edu.emory.cci.aiw.cvrg.eureka.services.config

EtlClientProvider(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.config.EtlClientProvider

EtlDestinationToDestinationVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

EtlDestinationToDestinationVisitor(ConversionSupport) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

EventMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

EventMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.EventMixin

EXTENDED_PHENOTYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

EXTENDED_PHENOTYPES - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

ExtendedPhenotype - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

An ExtendedPhenotype represents a phenotype with constraints on its duration and one of its property values.

ExtendedPhenotype() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

extendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

ExtendedPhenotype_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ExtendedPhenotype_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

extendedPhenotypes - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

ExtendedPropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

ExtendedPropositionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ExtendedPropositionMixin

F

find(String, K) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.finder.AbstractPropositionFinder

Retrieves a proposition definition from the PropositionRetriever specified in this object's constructor.

find(String, K) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionFinder

Finds the proposition definition for the given user and key.

findAll(String, List<String>, Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.finder.SystemPropositionFinder

Finds all of the system elements given by the keys for the given user

FREQUENCY_TYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

FrequencyConverter - Interface in edu.emory.cci.aiw.cvrg.eureka.services.conversion

FrequencyEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Contains attributes which describe a Protempa slice abstraction in the context of the Eureka! UI.

FrequencyEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

FrequencyEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

FrequencyEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

FrequencyNotValueThresholdConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

FrequencyNotValueThresholdConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyNotValueThresholdConverter

frequencyType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

FrequencyType - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

FrequencyType() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

FrequencyType_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

FrequencyType_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

FrequencyValueThresholdConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

FrequencyValueThresholdConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyValueThresholdConverter

G

GapFunctionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

GapFunctionMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.GapFunctionMixin

generate(HttpServletRequest) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.props.PublicUrlGenerator

Generates Eureka!'s best guess at the public URL.

get() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.EtlClientProvider

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

Gets the list of propositions the current proposition is abstracted from.

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getAbstractedFrom() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.SequentialTemporalPatternDefinitionMixin

getAppProperties() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the appProperties.

getAppProperties() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.resource.AppPropertyResource

getAppPropertiesLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Gets the AppPropertiesLinks.

getAppPropertiesLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the appPropertiesLinks.

getAppPropertiesLinks() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.resource.AppPropertyResource

getAppPropertiesModes() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Gets the AppPropertiesModes.

getAppPropertiesModes() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the appPropertiesModes.

getAppPropertiesModes() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.resource.AppPropertyResource

getAppPropertiesRegistration() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Gets the AppPropertiesRegistration.

getAppPropertiesRegistration() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the appPropertiesRegistration.

getAppPropertiesRegistration() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.resource.AppPropertyResource

getBoolean() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.BooleanValueMixin

getCalendarUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.AbsoluteTimeUnitMixin

getCategoryType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ConstantMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ContextDefinitionMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.EventMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.PrimitiveParameterMixin

getChildren() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.SequentialTemporalPatternDefinitionMixin

getComplement() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getContext(Class<?>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ObjectMapperProvider

getCount() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getCreated() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the creation date.

getDefaultSystemPropositions() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the default list of system propositions for the application.

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the phenotype's description.

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

getDescription() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

getDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the display name of the phenotype.

getEtlDestination() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

getEtlUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Get the URL for the eureka-protempa-etl application.

getExtendedPhenotypes() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getExtendedProposition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getFormatted() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ValueMixin

getFrequencyType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Get the role's identification number.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

Get the user's unique identifier.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the unique identifier for the phenotype.

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getInjector() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ConfigListener

getInstance(PropositionDefinitionConverterVisitor, List<PhenotypeEntity>) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionCollector

getInstance(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.json.DefaultSourceIdMixin

getInstance(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.json.NominalValueMixin

getInstance(BigDecimal) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.json.NumberValueMixin

getKey() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the key for the phenotype.

getLastModified() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the last modification time.

getLhsExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMaxDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getMaxDurationTimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getMaxf1s2() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMaxf1s2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMaxs1f2() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMaxs1f2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMaxTValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMaxUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMaxValueComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMaxValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMembers() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

getMinDuration() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getMinDurationTimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getMinf1s2() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMinf1s2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMins1f2() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMins1f2TimeUnit() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getMinTValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMinUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMinValueComp() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getMinValueThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Get the role's name.

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.props.SupportUri

getNode() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ServicesNodeToEtlNodeVisitor

getNumber() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.NumberValueMixin

getNumberValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.NumberValueMixin

getOrganizationName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesLinks

Gets the organizationName.

getPhenotypeEntity() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getPrimaryExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

getPrimaryProposition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.CategorizationConverter

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyNotValueThresholdConverter

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyValueThresholdConverter

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.SystemPropositionConverter

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsCompoundLowLevelAbstractionConverter

getPrimaryPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsLowLevelAbstractionConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.CategorizationConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyNotValueThresholdConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyValueThresholdConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.SystemPropositionConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsCompoundLowLevelAbstractionConverter

getPrimaryPropositionId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsLowLevelAbstractionConverter

getPropertyConstraint() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

getPropertyName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

getPropositionDefinitions() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

getProxyCallbackServer() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Gets the i2b2 admin username from application.properties.

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

getRank() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getRelatedTemporalExtendedPropositionDefinition() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.SubsequentTemporalExtendedPropositionDefinitionMixin

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getRelationOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getRelations() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

getRhsExtendedPhenotype() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

getRoles() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

getServicesUrl(HttpServletRequest) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Get the base URL for the services layer for external users.

getShortDisplayName() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ExtendedPropositionMixin

getStringRepresentation() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.NotRecordedSourceIdMixin

getSupportUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesLinks

Gets the supportUri.

getSupportUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Get the support email address for the application.

getSystemType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

getSystemType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

getThreshold() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

getThresholdsOperator() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

getToShowPropDefs() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionCollector

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

getType() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ValueMixin

getUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.AbsoluteTimeUnitMixin

getUri() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.props.SupportUri

getUrl() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

getUserEntityInstance() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.UserEntityFactory

getUserId() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Gets the user to which this phenotype belongs.

getUsername() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

Get the user's email address.

getUserPropDefs() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionCollector

getValue() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

getValueComparator() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

getValueThresholds() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getWithinAtLeast() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getWithinAtLeastUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getWithinAtLeastUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getWithinAtMost() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

getWithinAtMostUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

getWithinAtMostUnits() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

H

hashCode() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

HighLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

HighLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.HighLevelAbstractionJsonDeserializer

HighLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

HighLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.HighLevelAbstractionJsonSerializer

I

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

id - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

IN_SYSTEM - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

inSystem - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

IS_DEFAULT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

IS_DEFAULT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

IS_DEFAULT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ConstantMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ContextDefinitionMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.EventMixin

isConcatenable() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.PrimitiveParameterMixin

isConsecutive() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

isDefault() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

isDefault - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

isDefaultRole() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Is this role a default role?

isDemoMode() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesModes

Gets the demoMode status.

isEphiProhibited() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesModes

Gets the ephiProhibited status.

isHyperlinkable() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.props.SupportUri

isInherited() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.PropertyMixin

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Is the proposition a system level element?

isInSystem() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

isRegistrationEnabled() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesRegistration

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ConstantMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.ContextDefinitionMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.EventMixin

isSolid() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.PrimitiveParameterMixin

J

JpaRoleDao - Class in edu.emory.cci.aiw.cvrg.eureka.services.dao

A RoleDao implementation, backed by JPA entities and queries.

JpaRoleDao(Provider<EntityManager>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.dao.JpaRoleDao

Create a new object with the given entity manager.

JpaUserDao - Class in edu.emory.cci.aiw.cvrg.eureka.services.dao

An implementation of the UserDao interface, backed by JPA entities and queries.

JpaUserDao(Provider<EntityManager>) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.dao.JpaUserDao

Create an object with the give entity manager.

K

key - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

KEY - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

L

LAST_MODIFIED - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

lastModified - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

LHS_EXTENDED_PHENOTYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

LHS_EXTENDED_PHENOTYPE_RELATIONS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

lhsExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

lhsExtendedPhenotype_relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

LowLevelAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

LowLevelAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.LowLevelAbstractionJsonDeserializer

LowLevelAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

LowLevelAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.LowLevelAbstractionJsonSerializer

M

main(String[]) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.util.SuperUserDefaultPasswordGenerator

MAX_DURATION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

MAX_DURATION_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

MAX_TVALUE_THRESHOLD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MAX_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MAX_VALUE_COMP - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MAX_VALUE_THRESHOLD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

maxDuration - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

maxDurationTimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

maxf1s2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MAXF1S2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MAXF1S2_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

maxf1s2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

maxs1f2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MAXS1F2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MAXS1F2_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

maxs1f2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

maxTValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

maxUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

maxValueComp - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

maxValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

md5(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.util.StringUtil

Create an MD5 hash from the given string.

members - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity_

MEMBERS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity_

MIN_DURATION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

MIN_DURATION_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

MIN_TVALUE_THRESHOLD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MIN_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MIN_VALUE_COMP - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

MIN_VALUE_THRESHOLD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

minDuration - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

minDurationTimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

minf1s2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MINF1S2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MINF1S2_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

minf1s2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

mins1f2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MINS1F2 - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

MINS1F2_TIME_UNIT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

mins1f2TimeUnit - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

minTValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

minUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

minValueComp - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

minValueThreshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

N

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

name - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

nameToUnit(String) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.json.AbsoluteTimeUnitMixin

NominalValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

NominalValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.NominalValueMixin

NotRecordedSourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

NotRecordedSourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.NotRecordedSourceIdMixin

NumberValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

NumberValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.NumberValueMixin

O

ObjectMapperProvider - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

Provides custom JSON serialization/deserialization from proposition definitions and other objects.

ObjectMapperProvider() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ObjectMapperProvider

P

PHENOTYPE_ENTITY - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

PhenotypeConversionSupport - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

PhenotypeConversionSupport() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

phenotypeEntity - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

PhenotypeEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Holds information about a user-defined ontological concept.

PhenotypeEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

PhenotypeEntity(CategoryEntity.CategoryType) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

PhenotypeEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

PhenotypeEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

PhenotypeEntityVisitor - Interface in edu.emory.cci.aiw.cvrg.eureka.services.entity

PRIMARY_EXTENDED_PHENOTYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity_

primaryExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity_

PrimitiveParameterMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

PrimitiveParameterMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.PrimitiveParameterMixin

PROPERTY_CONSTRAINT - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

PROPERTY_NAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

propertyConstraint - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

PropertyConstraint - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

PropertyConstraint() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

PropertyConstraint_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

PropertyConstraint_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

PropertyMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

PropertyMixin(String, String, String, ValueType, String, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.PropertyMixin

propertyName - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

PropositionChildrenVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

PropositionChildrenVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

PropositionDefinitionCollector - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

PropositionDefinitionConverterVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

PropositionDefinitionConverterVisitor(SystemPropositionConverter, CategorizationConverter, SequenceConverter, ValueThresholdsLowLevelAbstractionConverter, ValueThresholdsCompoundLowLevelAbstractionConverter, FrequencyNotValueThresholdConverter, FrequencyValueThresholdConverter) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

PropositionDefinitionTypeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.util

PropositionDefinitionTypeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

PropositionEntityVisitable - Interface in edu.emory.cci.aiw.cvrg.eureka.services.entity

PropositionFinder<K> - Interface in edu.emory.cci.aiw.cvrg.eureka.services.finder

Finds proposition definitions.

PropositionFindException - Exception in edu.emory.cci.aiw.cvrg.eureka.services.finder

Represents errors in retrieving proposition definitions.

PropositionFindException() - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionFindException

PropositionFindException(String) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionFindException

PropositionFindException(String, Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionFindException

PropositionFindException(Throwable) - Constructor for exception edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionFindException

PropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

PropositionMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.PropositionMixin

PropositionRetriever<K> - Interface in edu.emory.cci.aiw.cvrg.eureka.services.finder

Interface for accessing sources of proposition definitions.

PropositionTranslator<P extends org.eurekaclinical.eureka.client.comm.Phenotype,PE extends PhenotypeEntity> - Interface in edu.emory.cci.aiw.cvrg.eureka.services.translation

Translates a UI phenotype into a proposition as understood by the service layer data model.

PropositionTypeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

PropositionTypeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

PropositionUtil - Class in edu.emory.cci.aiw.cvrg.eureka.services.util

Provides common utility functions operating on PhenotypeEntitys.

PublicUrlGenerator - Class in edu.emory.cci.aiw.cvrg.eureka.services.props

Generates Eureka!'s best guess at the public URL based on a servlet request and the machine hostname.

PublicUrlGenerator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.props.PublicUrlGenerator

R

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

RANK - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

RANK - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

RANK - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

rank - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

RANK - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

ReferenceMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

ReferenceMixin(String, String, String[]) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ReferenceMixin

Relation - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Relation() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

Relation_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Relation_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

RELATION_OPERATOR - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

RELATION_OPERATOR - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

RelationMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

RelationMixin(Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit, Integer, Unit) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.RelationMixin

relationOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

RelationOperator - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

RelationOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

relationOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

RelationOperator.Type - Enum in edu.emory.cci.aiw.cvrg.eureka.services.entity

RelationOperator_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

RelationOperator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity_

RELATIONS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity_

removeRole(AuthorizedRoleEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

retrieve(String, K) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.finder.PropositionRetriever

Retrieves a proposition definition with the specified id and for the specified user.

retrieve(String, String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.finder.SystemPropositionRetriever

retrieveAll(String, List<String>, Boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.finder.SystemPropositionRetriever

Retrieves all of the system elements given by the keys for the given user

RHS_EXTENDED_PHENOTYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

RHS_EXTENDED_PHENOTYPE_RELATIONS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

rhsExtendedPhenotype - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation_

rhsExtendedPhenotype_relations - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype_

roles - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

ROLES - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

S

SequenceEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Contains attributes which describe a Protempa high level abstraction.

SequenceEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

SequenceEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

SequenceEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity_

SequentialTemporalPatternDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

SequentialTemporalPatternDefinitionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.SequentialTemporalPatternDefinitionMixin

serialize(CompoundLowLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.CompoundLowLevelAbstractionJsonSerializer

serialize(HighLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.HighLevelAbstractionJsonSerializer

serialize(LowLevelAbstractionDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.LowLevelAbstractionJsonSerializer

serialize(SliceDefinition, JsonGenerator, SerializerProvider) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.json.SliceAbstractionJsonSerializer

ServiceProperties - Class in edu.emory.cci.aiw.cvrg.eureka.services.config

Looks up the application properties file (application.properties) and presents the values contained in the file to the rest of the application.

ServiceProperties() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

ServicesNodeToEtlNodeVisitor - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

ServicesNodeToEtlNodeVisitor() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ServicesNodeToEtlNodeVisitor

setAbstractedFrom(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setAppPropertiesLinks(AppPropertiesLinks) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Sets the links status.

setAppPropertiesLinks(AppPropertiesLinks) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Sets the appPropertiesLinks.

setAppPropertiesModes(AppPropertiesModes) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Sets the modes status.

setAppPropertiesModes(AppPropertiesModes) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Sets the appPropertiesModes.

setAppPropertiesRegistration(AppPropertiesRegistration) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppProperties

Sets the registration status.

setAppPropertiesRegistration(AppPropertiesRegistration) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.config.ServiceProperties

Sets the appPropertiesRegistration.

setCategoryType(CategoryEntity.CategoryType) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

setCatType(CategoryEntity.CategoryType) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

setComplement(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setConsecutive(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setConverterVisitor(PropositionDefinitionConverterVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.CategorizationConverter

setConverterVisitor(PropositionDefinitionConverterVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyValueThresholdConverter

setConverterVisitor(PropositionDefinitionConverterVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsCompoundLowLevelAbstractionConverter

setConverterVisitor(PropositionDefinitionConverterVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsLowLevelAbstractionConverter

setCount(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setCreated(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the creation time.

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setDefault(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

setDefaultRole(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Set the role's default flag.

setDemoMode(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesModes

Sets the demoMode status.

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the phenotype's description.

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

setDescription(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setDisplayName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the display name of the phenotype.

setEphiProhibited(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesModes

Sets the ephiProhibited status.

setExtendedPhenotypes(List<ExtendedPhenotype>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setExtendedProposition(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setFrequencyType(FrequencyType) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Set the role's identification number.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

Set the user's unique identifier.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the unique identifier for the phenotype.

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setInSystem(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets whether the proposition is a system level element.

setKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the key for the phenotype.

setLastModified(Date) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the last modification time.

setLhsExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMaxDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setMaxDurationTimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setMaxf1s2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMaxf1s2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMaxs1f2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMaxs1f2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMaxTValueThreshold(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMaxUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMaxValueComp(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMaxValueThreshold(BigDecimal) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMembers(List<PhenotypeEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

setMinDuration(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setMinDurationTimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setMinf1s2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMinf1s2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMins1f2(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMins1f2TimeUnit(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setMinTValueThreshold(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMinUnits(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMinValueComp(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setMinValueThreshold(BigDecimal) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

Set the role's name.

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

setName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setOrganizationName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesLinks

Sets the organizationName.

setPhenotypeEntity(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setPrimaryExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

setPropertyConstraint(PropertyConstraint) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

setPropertyName(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setRank(int) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

setRank(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setRegistrationEnabled(boolean) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesRegistration

Sets the localAccountRegistrationEnabled status.

setRelationOperator(RelationOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setRelationOperator(RelationOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setRelations(List<Relation>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

setRhsExtendedPhenotype(ExtendedPhenotype) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

setRoles(List<AuthorizedRoleEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

setSupportUri(SupportUri) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.comm.AppPropertiesLinks

Sets the supportUri.

setSystemType(SystemType) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

setThreshold(ValueComparator.Threshold) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

setThresholdsOperator(ThresholdsOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

setType(RelationOperator.Type) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

setUserId(Long) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Sets the user to which this phenotype belongs.

setUsername(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

Set the user's email address.

setValue(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

setValueComparator(ValueComparator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

setValueThresholds(List<ValueThresholdEntity>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

setVisitor(PropositionDefinitionConverterVisitor) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.FrequencyNotValueThresholdConverter

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setWithinAtLeast(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setWithinAtLeastUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setWithinAtLeastUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setWithinAtMost(Integer) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

setWithinAtMostUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

setWithinAtMostUnits(TimeUnit) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

SliceAbstractionJsonDeserializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

SliceAbstractionJsonDeserializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.SliceAbstractionJsonDeserializer

SliceAbstractionJsonSerializer - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

SliceAbstractionJsonSerializer() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.SliceAbstractionJsonSerializer

sourceId(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

SourceIdMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

SourceIdMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.SourceIdMixin

StringUtil - Class in edu.emory.cci.aiw.cvrg.eureka.services.util

Provide string related methods.

StringUtil() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.util.StringUtil

SubsequentTemporalExtendedPropositionDefinitionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

SubsequentTemporalExtendedPropositionDefinitionMixin(Relation, TemporalExtendedPropositionDefinition) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.SubsequentTemporalExtendedPropositionDefinitionMixin

SuperUserDefaultPasswordGenerator - Class in edu.emory.cci.aiw.cvrg.eureka.services.util

SuperUserDefaultPasswordGenerator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.util.SuperUserDefaultPasswordGenerator

SupportUri - Class in edu.emory.cci.aiw.cvrg.eureka.services.props

SupportUri(URI, String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.props.SupportUri

SYSTEM_TYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition_

SystemProposition - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

SystemProposition() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

SystemProposition_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

SystemProposition_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition_

SystemPropositionConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

SystemPropositionConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.SystemPropositionConverter

SystemPropositionFinder - Class in edu.emory.cci.aiw.cvrg.eureka.services.finder

SystemPropositionFinder(SystemPropositionRetriever) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.finder.SystemPropositionFinder

SystemPropositionRetriever - Class in edu.emory.cci.aiw.cvrg.eureka.services.finder

Retrieves proposition definitions from the ETL layer.

SystemPropositionRetriever(EurekaClinicalProtempaClient) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.finder.SystemPropositionRetriever

systemType - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition_

T

TemporalExtendedParameterMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

TemporalExtendedParameterMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.TemporalExtendedParameterMixin

TemporalExtendedPropositionMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

TemporalExtendedPropositionMixin(String) - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.TemporalExtendedPropositionMixin

threshold - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

THRESHOLD - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

THRESHOLDS_OPERATOR - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity_

ThresholdsOperator - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ThresholdsOperator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

thresholdsOperator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity_

ThresholdsOperator_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ThresholdsOperator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator_

TimeUnit - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

TimeUnit() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

TimeUnit_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

TimeUnit_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit_

toPhenotypeKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

toPhenotypeKey(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

toPropositionId(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

toPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

toPropositionId(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

toPropositionId(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

toPropositionId(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

toPropositionIdWrapped(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.AbstractConverter

toPropositionIdWrapped(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

toPropositionIdWrapped(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ConversionSupport

toPropositionIdWrapped(String) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

toPropositionIdWrapped(PhenotypeEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PhenotypeConversionSupport

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedRoleEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ExtendedPhenotype

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyType

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.Relation

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SequenceEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.SystemProposition

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ThresholdsOperator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.TimeUnit

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

toString() - Method in class edu.emory.cci.aiw.cvrg.eureka.services.props.SupportUri

toSystemPhenotype(String, PropositionDefinition, boolean, SystemPropositionFinder) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionUtil

Wraps a proposition definition into a proposition wrapper.

toSystemProposition(PropositionDefinition, Long) - Static method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionUtil

translateFromPhenotype(P) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.translation.PropositionTranslator

Translates the given phenotype to a proposition understood by the services layer data model.

translateFromProposition(PE) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.translation.PropositionTranslator

Translates the given proposition entity into a phenotype understood by the webapp layer.

type - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

TYPE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator_

U

UnitMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

UnitMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.UnitMixin

USER_ID - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

UserEntityFactory - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

UserEntityFactory() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.UserEntityFactory

userId - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

username - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

USERNAME - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.AuthorizedUserEntity_

V

value - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

VALUE - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

VALUE_COMPARATOR - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

VALUE_THRESHOLDS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity_

valueComparator - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropertyConstraint_

ValueComparator - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ValueComparator() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator

ValueComparator.Threshold - Enum in edu.emory.cci.aiw.cvrg.eureka.services.entity

ValueComparator_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ValueComparator_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator_

ValueMixin - Class in edu.emory.cci.aiw.cvrg.eureka.services.json

ValueMixin() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.json.ValueMixin

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity.CategoryType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator.Threshold

Returns the enum constant of this type with the specified name.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.CategoryEntity.CategoryType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.RelationOperator.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueComparator.Threshold

Returns an array containing the constants of this enum type, in the order they are declared.

ValueThresholdEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Represents a Protempa allowed value for a org.protempa .LowLevelAbstraction

ValueThresholdEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity

ValueThresholdEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ValueThresholdEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

ValueThresholdGroupEntity - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

Contains attributes which describe a Protempa low-level abstraction in the context of the Eureka! UI.

ValueThresholdGroupEntity() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity

ValueThresholdGroupEntity_ - Class in edu.emory.cci.aiw.cvrg.eureka.services.entity

ValueThresholdGroupEntity_() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity_

valueThresholds - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdGroupEntity_

ValueThresholdsCompoundLowLevelAbstractionConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

ValueThresholdsCompoundLowLevelAbstractionConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsCompoundLowLevelAbstractionConverter

ValueThresholdsLowLevelAbstractionConverter - Class in edu.emory.cci.aiw.cvrg.eureka.services.conversion

ValueThresholdsLowLevelAbstractionConverter() - Constructor for class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ValueThresholdsLowLevelAbstractionConverter

visit(CohortDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(I2B2Destination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(Neo4jDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(PatientSetExtractorDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(PatientSetSenderDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(TabularFileDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(RelDbDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(PatientListDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(OmopDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(CovidOmopDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(PhenotypeSearchDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.DestinationToEtlDestinationVisitor

visit(EtlCohortDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlI2B2Destination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlNeo4jDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlPatientSetExtractorDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlPatientSetSenderDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlTabularFileDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlPatientListDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlOmopDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlCovidOmopDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(EtlPhenotypeSearchDestination) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.EtlDestinationToDestinationVisitor

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.PropositionDefinitionConverterVisitor

visit(Literal) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ServicesNodeToEtlNodeVisitor

visit(UnaryOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ServicesNodeToEtlNodeVisitor

visit(BinaryOperator) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.conversion.ServicesNodeToEtlNodeVisitor

visit(SystemProposition) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntityVisitor

visit(CategoryEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntityVisitor

visit(SequenceEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntityVisitor

visit(ValueThresholdGroupEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntityVisitor

visit(FrequencyEntity) - Method in interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntityVisitor

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionChildrenVisitor

visit(SystemProposition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

visit(CategoryEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

visit(SequenceEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

visit(ValueThresholdGroupEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

visit(FrequencyEntity) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionTypeVisitor

visit(Collection<? extends PropositionDefinition>) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(ConstantDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(EventDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(HighLevelAbstractionDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(LowLevelAbstractionDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(SequentialTemporalPatternDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(PrimitiveParameterDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(SliceDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(CompoundLowLevelAbstractionDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

visit(ContextDefinition) - Method in class edu.emory.cci.aiw.cvrg.eureka.services.util.PropositionDefinitionTypeVisitor

W

WITHIN_AT_LEAST - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

WITHIN_AT_LEAST - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

WITHIN_AT_LEAST_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

WITHIN_AT_LEAST_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

WITHIN_AT_MOST - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

WITHIN_AT_MOST - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

WITHIN_AT_MOST_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

WITHIN_AT_MOST_UNITS - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

withinAtLeast - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

withinAtLeast - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

withinAtLeastUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

withinAtLeastUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

withinAtMost - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

withinAtMost - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

withinAtMostUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.FrequencyEntity_

withinAtMostUnits - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.ValueThresholdEntity_

Z

Z_DESCRIPTION - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

zDescription - Static variable in class edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity_

A B C D E F G H I J K L M N O P R S T U V W Z