Uses of Class
edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

Packages that use PhenotypeEntity

Package	Description
edu.emory.cci.aiw.cvrg.eureka.services.conversion	This package implements conversion of Eureka! derived phenotypes to Protempa proposition definitions.
edu.emory.cci.aiw.cvrg.eureka.services.entity
edu.emory.cci.aiw.cvrg.eureka.services.translation

Uses of PhenotypeEntity in edu.emory.cci.aiw.cvrg.eureka.services.conversion

Methods in edu.emory.cci.aiw.cvrg.eureka.services.conversion with parameters of type PhenotypeEntity

Modifier and Type	Method and Description
protected org.protempa.proposition.value.NominalValue	AbstractConverter.asValue(PhenotypeEntity phenotype)
org.protempa.proposition.value.NominalValue	PhenotypeConversionSupport.asValue(PhenotypeEntity phenotype)
protected String	AbstractConverter.asValueCompString(PhenotypeEntity phenotype)
String	PhenotypeConversionSupport.asValueCompString(PhenotypeEntity phenotype)
protected String	AbstractConverter.asValueString(PhenotypeEntity phenotype)
String	PhenotypeConversionSupport.asValueString(PhenotypeEntity phenotype)
protected org.protempa.SourceId	AbstractConverter.sourceId(PhenotypeEntity phenotype)
protected String	AbstractConverter.toPropositionId(PhenotypeEntity phenotype)
String	ConversionSupport.toPropositionId(PhenotypeEntity phenotype)
String	PhenotypeConversionSupport.toPropositionId(PhenotypeEntity phenotype)
protected String	AbstractConverter.toPropositionIdWrapped(PhenotypeEntity phenotype)
String	ConversionSupport.toPropositionIdWrapped(PhenotypeEntity phenotype)
String	PhenotypeConversionSupport.toPropositionIdWrapped(PhenotypeEntity phenotype)

Method parameters in edu.emory.cci.aiw.cvrg.eureka.services.conversion with type arguments of type PhenotypeEntity

Modifier and Type	Method and Description
static PropositionDefinitionCollector	PropositionDefinitionCollector.getInstance(PropositionDefinitionConverterVisitor converterVisitor, List<PhenotypeEntity> phenotypes)

Uses of PhenotypeEntity in edu.emory.cci.aiw.cvrg.eureka.services.entity

Subclasses of PhenotypeEntity in edu.emory.cci.aiw.cvrg.eureka.services.entity

Modifier and Type	Class and Description
class	CategoryEntity
class	FrequencyEntity Contains attributes which describe a Protempa slice abstraction in the context of the Eureka! UI.
class	SequenceEntity Contains attributes which describe a Protempa high level abstraction.
class	SystemProposition
class	ValueThresholdGroupEntity Contains attributes which describe a Protempa low-level abstraction in the context of the Eureka! UI.

Fields in edu.emory.cci.aiw.cvrg.eureka.services.entity with type parameters of type PhenotypeEntity

Modifier and Type	Field and Description
static javax.persistence.metamodel.SingularAttribute<ValueThresholdEntity,PhenotypeEntity>	ValueThresholdEntity_.abstractedFrom
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,CategoryEntity.CategoryType>	PhenotypeEntity_.categoryType
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,Date>	PhenotypeEntity_.created
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,String>	PhenotypeEntity_.displayName
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,Long>	PhenotypeEntity_.id
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,Boolean>	PhenotypeEntity_.inSystem
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,String>	PhenotypeEntity_.key
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,Date>	PhenotypeEntity_.lastModified
static javax.persistence.metamodel.ListAttribute<CategoryEntity,PhenotypeEntity>	CategoryEntity_.members
static javax.persistence.metamodel.SingularAttribute<ExtendedPhenotype,PhenotypeEntity>	ExtendedPhenotype_.phenotypeEntity
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,Long>	PhenotypeEntity_.userId
static javax.persistence.metamodel.SingularAttribute<PhenotypeEntity,String>	PhenotypeEntity_.zDescription

Methods in edu.emory.cci.aiw.cvrg.eureka.services.entity that return PhenotypeEntity

Modifier and Type	Method and Description
PhenotypeEntity	FrequencyEntity.getAbstractedFrom()
PhenotypeEntity	ValueThresholdEntity.getAbstractedFrom()
PhenotypeEntity	ExtendedPhenotype.getPhenotypeEntity()

Methods in edu.emory.cci.aiw.cvrg.eureka.services.entity that return types with arguments of type PhenotypeEntity

Modifier and Type	Method and Description
List<PhenotypeEntity>	SequenceEntity.getAbstractedFrom() Gets the list of propositions the current proposition is abstracted from.
List<? extends PhenotypeEntity>	PropositionChildrenVisitor.getChildren()
List<PhenotypeEntity>	CategoryEntity.getMembers()

Methods in edu.emory.cci.aiw.cvrg.eureka.services.entity with parameters of type PhenotypeEntity

Modifier and Type	Method and Description
void	ValueThresholdEntity.setAbstractedFrom(PhenotypeEntity abstractedFrom)
void	ExtendedPhenotype.setPhenotypeEntity(PhenotypeEntity inPhenotypeEntity)

Method parameters in edu.emory.cci.aiw.cvrg.eureka.services.entity with type arguments of type PhenotypeEntity

Modifier and Type	Method and Description
void	CategoryEntity.setMembers(List<PhenotypeEntity> members)

Uses of PhenotypeEntity in edu.emory.cci.aiw.cvrg.eureka.services.translation

Classes in edu.emory.cci.aiw.cvrg.eureka.services.translation with type parameters of type PhenotypeEntity

Modifier and Type	Interface and Description
interface	PropositionTranslator<P extends org.eurekaclinical.eureka.client.comm.Phenotype,PE extends PhenotypeEntity> Translates a UI phenotype into a proposition as understood by the service layer data model.