edu.emory.cci.aiw.cvrg.eureka.services.entity

Class PhenotypeEntity

java.lang.Object

edu.emory.cci.aiw.cvrg.eureka.services.entity.PhenotypeEntity

All Implemented Interfaces:

PropositionEntityVisitable, Serializable

Direct Known Subclasses:

CategoryEntity, FrequencyEntity, SequenceEntity, SystemProposition, ValueThresholdGroupEntity

@Entity
public abstract class PhenotypeEntity
extends Object
implements PropositionEntityVisitable, Serializable

Holds information about a user-defined ontological concept.

Author:

hrathod

See Also:

Serialized Form

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	PhenotypeEntity()
protected	PhenotypeEntity(CategoryEntity.CategoryType categoryType)

Method Summary

Modifier and Type	Method and Description
CategoryEntity.CategoryType	getCategoryType()
Date	getCreated() Gets the creation date.
String	getDescription() Gets the phenotype's description.
String	getDisplayName() Gets the display name of the phenotype.
Long	getId() Gets the unique identifier for the phenotype.
String	getKey() Gets the key for the phenotype.
Date	getLastModified() Gets the last modification time.
Long	getUserId() Gets the user to which this phenotype belongs.
boolean	isInSystem() Is the proposition a system level element?
protected void	setCatType(CategoryEntity.CategoryType categoryType)
void	setCreated(Date inCreated) Sets the creation time.
void	setDescription(String inDescription) Sets the phenotype's description.
void	setDisplayName(String inDisplayName) Sets the display name of the phenotype.
void	setId(Long inId) Sets the unique identifier for the phenotype.
void	setInSystem(boolean inSystem) Sets whether the proposition is a system level element.
void	setKey(String inKey) Sets the key for the phenotype.
void	setLastModified(Date inLastModified) Sets the last modification time.
void	setUserId(Long inUserId) Sets the user to which this phenotype belongs.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.emory.cci.aiw.cvrg.eureka.services.entity.PropositionEntityVisitable

accept

Constructor Detail

PhenotypeEntity

protected PhenotypeEntity()

PhenotypeEntity

protected PhenotypeEntity(CategoryEntity.CategoryType categoryType)

Method Detail

getDescription

public String getDescription()

Gets the phenotype's description.

Returns:

The phenotype's description.

setDescription

public void setDescription(String inDescription)

Sets the phenotype's description.

Parameters:

inDescription - The phenotype's description to set.

getDisplayName

public String getDisplayName()

Gets the display name of the phenotype.

Returns:

The display name of the phenotype.

setDisplayName

public void setDisplayName(String inDisplayName)

Sets the display name of the phenotype.

Parameters:

inDisplayName - The display name of the phenotype.

getUserId

public Long getUserId()

Gets the user to which this phenotype belongs.

Returns:

The user to which this phenotype belongs.

setUserId

public void setUserId(Long inUserId)

Sets the user to which this phenotype belongs.

Parameters:

inUserId - The user to which this phenotype belongs.

getId

public Long getId()

Gets the unique identifier for the phenotype.

Returns:

The unique identifier for the phenotype.

setId

public void setId(Long inId)

Sets the unique identifier for the phenotype.

Parameters:

inId - The unique identifier for the phenotype.

isInSystem

public boolean isInSystem()

Is the proposition a system level element?

Returns:

True if system level, false otherwise.

setInSystem

public void setInSystem(boolean inSystem)

Sets whether the proposition is a system level element.

Parameters:

inSystem - The value of the inSystem property to set.

getKey

public String getKey()

Gets the key for the phenotype.

Returns:

Null if the phenotype is not system level, id in the system ontology otherwise.

setKey

public void setKey(String inKey)

Sets the key for the phenotype.

Parameters:

inKey - The id of the phenotype in the system ontology.

getCreated

public Date getCreated()

Gets the creation date.

Returns:

The creation date.

setCreated

public void setCreated(Date inCreated)

Sets the creation time.

Parameters:

inCreated - The creation time.

getLastModified

public Date getLastModified()

Gets the last modification time.

Returns:

The last modification time.

setLastModified

public void setLastModified(Date inLastModified)

Sets the last modification time.

Parameters:

inLastModified - The last modification time.

setCatType

protected void setCatType(CategoryEntity.CategoryType categoryType)

getCategoryType

public CategoryEntity.CategoryType getCategoryType()

toString

public String toString()

Overrides:

toString in class Object