edu.emory.cci.aiw.cvrg.eureka.services.translation

Class SequenceTranslator

java.lang.Object

edu.emory.cci.aiw.cvrg.eureka.services.translation.SequenceTranslator

All Implemented Interfaces:

PropositionTranslator<org.eurekaclinical.eureka.client.comm.Sequence,SequenceEntity>

public class SequenceTranslator
extends Object
implements PropositionTranslator<org.eurekaclinical.eureka.client.comm.Sequence,SequenceEntity>

Translates from sequences (UI phenotype) to high-level abstractions. Creates extended propositions and relations as needed.

Constructor Summary

Constructors

Constructor and Description
SequenceTranslator(PhenotypeEntityDao inPropositionDao, TimeUnitDao inTimeUnitDao, RelationOperatorDao inRelationOperatorDao, SystemPropositionFinder inFinder, ValueComparatorDao inValueComparatorDao, SourceConfigResource inSourceConfigResource)

Method Summary

Modifier and Type	Method and Description
SequenceEntity	translateFromPhenotype(org.eurekaclinical.eureka.client.comm.Sequence phenotype) Translates the given phenotype to a proposition understood by the services layer data model.
org.eurekaclinical.eureka.client.comm.Sequence	translateFromProposition(SequenceEntity proposition) Translates the given proposition entity into a phenotype understood by the webapp layer.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceTranslator

@Inject
public SequenceTranslator(PhenotypeEntityDao inPropositionDao,
                                  TimeUnitDao inTimeUnitDao,
                                  RelationOperatorDao inRelationOperatorDao,
                                  SystemPropositionFinder inFinder,
                                  ValueComparatorDao inValueComparatorDao,
                                  SourceConfigResource inSourceConfigResource)

Method Detail

translateFromPhenotype

public SequenceEntity translateFromPhenotype(org.eurekaclinical.eureka.client.comm.Sequence phenotype)
                                      throws org.eurekaclinical.eureka.client.comm.exception.PhenotypeHandlingException

Description copied from interface: PropositionTranslator

Translates the given phenotype to a proposition understood by the services layer data model. The inverse of PropositionTranslator.translateFromProposition(PhenotypeEntity) .

Specified by:

translateFromPhenotype in interface PropositionTranslator<org.eurekaclinical.eureka.client.comm.Sequence,SequenceEntity>

Parameters:

phenotype - the phenotype to translate from

Returns:

A PhenotypeEntity equivalent to the phenotype.

Throws:

org.eurekaclinical.eureka.client.comm.exception.PhenotypeHandlingException - if an error occurred retrieving proposition definitions.

translateFromProposition

public org.eurekaclinical.eureka.client.comm.Sequence translateFromProposition(SequenceEntity proposition)

Description copied from interface: PropositionTranslator

Translates the given proposition entity into a phenotype understood by the webapp layer. The inverse of PropositionTranslator.translateFromPhenotype(Phenotype).

Specified by:

translateFromProposition in interface PropositionTranslator<org.eurekaclinical.eureka.client.comm.Sequence,SequenceEntity>

Parameters:

proposition - the proposition to translate from

Returns:

A Phenotype equivalent to the proposition.