edu.emory.cci.aiw.cvrg.eureka.services.dao

Class JpaPhenotypeEntityDao

java.lang.Object

org.eurekaclinical.standardapis.dao.GenericDao<PhenotypeEntity,Long>

edu.emory.cci.aiw.cvrg.eureka.services.dao.JpaPhenotypeEntityDao

All Implemented Interfaces:

PhenotypeEntityDao, org.eurekaclinical.standardapis.dao.Dao<PhenotypeEntity,Long>

public class JpaPhenotypeEntityDao
extends org.eurekaclinical.standardapis.dao.GenericDao<PhenotypeEntity,Long>
implements PhenotypeEntityDao

An implementation of the PhenotypeEntityDao interface, backed by JPA entities and queries.

Author:

hrathod

Nested Class Summary

Nested classes/interfaces inherited from class org.eurekaclinical.standardapis.dao.GenericDao

org.eurekaclinical.standardapis.dao.GenericDao.QueryPathProvider<E,P>, org.eurekaclinical.standardapis.dao.GenericDao.SqlComparator

Constructor Summary

Constructors

Constructor and Description
JpaPhenotypeEntityDao(com.google.inject.Provider<javax.persistence.EntityManager> inProvider) Create an object with the given entity manager provider.

Method Summary

Modifier and Type	Method and Description
PhenotypeEntity	getById(Long inId) Gets a user-defined phenotype entity based on the given id
PhenotypeEntity	getByUserAndKey(Long inUserId, String inKey) Gets a user-defined phenotype entity based on the "key" attribute.
List<PhenotypeEntity>	getByUserId(Long inUserId) Gets a list of user-defined phenotype entities for the given user ID.
PhenotypeEntity	getUserOrSystemByUserAndKey(Long inUserId, String inKey) Gets a system proposition definition that has been loaded previously into the database.

Methods inherited from class org.eurekaclinical.standardapis.dao.GenericDao

create, getAll, getEntityManager, getListAsc, getListByAttribute, getListByAttribute, getListByAttribute, getUniqueByAttribute, getUniqueByAttribute, refresh, remove, retrieve, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.eurekaclinical.standardapis.dao.Dao

create, getAll, refresh, remove, retrieve, update

Constructor Detail

JpaPhenotypeEntityDao

@Inject
public JpaPhenotypeEntityDao(com.google.inject.Provider<javax.persistence.EntityManager> inProvider)

Create an object with the given entity manager provider.

Parameters:

inProvider - An entity manager provider.

Method Detail

getByUserAndKey

public PhenotypeEntity getByUserAndKey(Long inUserId,
                                       String inKey)

Description copied from interface: PhenotypeEntityDao

Gets a user-defined phenotype entity based on the "key" attribute.

Specified by:

getByUserAndKey in interface PhenotypeEntityDao

Parameters:

inUserId - The userId to search for in the database.

inKey - The key to be searched in the database.

Returns:

A proposition if found, null otherwise.

getUserOrSystemByUserAndKey

public PhenotypeEntity getUserOrSystemByUserAndKey(Long inUserId,
                                                   String inKey)

Description copied from interface: PhenotypeEntityDao

Gets a system proposition definition that has been loaded previously into the database.

Specified by:

getUserOrSystemByUserAndKey in interface PhenotypeEntityDao

Parameters:

inUserId - The userId to search for in the database.

inKey - he key to be searched in the database.

Returns:

a system proposition found in the database, null otherwise.

getByUserId

public List<PhenotypeEntity> getByUserId(Long inUserId)

Description copied from interface: PhenotypeEntityDao

Gets a list of user-defined phenotype entities for the given user ID.

Specified by:

getByUserId in interface PhenotypeEntityDao

Parameters:

inUserId - the unique identifier for the given user.

Returns:

A list of propositions belonging to the given user.

getById

public PhenotypeEntity getById(Long inId)

Description copied from interface: PhenotypeEntityDao

Gets a user-defined phenotype entity based on the given id

Specified by:

getById in interface PhenotypeEntityDao

Parameters:

inId - The id to search for in the database.

Returns:

A proposition if found, null otherwise.