Package org.bridgedb.file.orthoxml

Class IDMapperOrthoXml

java.lang.Object

org.bridgedb.file.orthoxml.IDMapperOrthoXml

All Implemented Interfaces:

IDMapper

public class IDMapperOrthoXml
extends Object
implements IDMapper

Constructor Summary

Constructors

Constructor	Description
IDMapperOrthoXml(Reader reader)

Method Summary

Modifier and Type	Method	Description
void	close()
Set<Xref>	freeSearch(String text, int limit)
IDMapperCapabilities	getCapabilities()
boolean	isConnected()
Map<Xref,Set<Xref>>	mapID(Collection<Xref> srcXrefs, DataSource... tgtDataSources)
Set<Xref>	mapID(Xref ref, DataSource... tgtDataSources)
boolean	xrefExists(Xref xref)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IDMapperOrthoXml

public IDMapperOrthoXml(Reader reader)
                 throws IDMapperException

Throws:

IDMapperException

Method Detail

mapID

public Map<Xref,Set<Xref>> mapID(Collection<Xref> srcXrefs,
                                       DataSource... tgtDataSources)
                                throws IDMapperException

Specified by:

mapID in interface IDMapper

Throws:

IDMapperException

mapID

public Set<Xref> mapID(Xref ref,
                       DataSource... tgtDataSources)
                throws IDMapperException

Specified by:

mapID in interface IDMapper

Throws:

IDMapperException

xrefExists

public boolean xrefExists(Xref xref)
                   throws IDMapperException

Specified by:

xrefExists in interface IDMapper

Throws:

IDMapperException

freeSearch

public Set<Xref> freeSearch(String text,
                            int limit)
                     throws IDMapperException

Specified by:

freeSearch in interface IDMapper

Throws:

IDMapperException

getCapabilities

public IDMapperCapabilities getCapabilities()

Specified by:

getCapabilities in interface IDMapper

close

public void close()
           throws IDMapperException

Specified by:

close in interface IDMapper

Throws:

IDMapperException

isConnected

public boolean isConnected()

Specified by:

isConnected in interface IDMapper