Uses of Interface
org.biopax.paxtools.model.level3.ControlledVocabulary

Packages that use ControlledVocabulary

Package	Description
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of ControlledVocabulary in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement ControlledVocabulary

Modifier and Type	Class	Description
class	CellularLocationVocabularyImpl
class	CellVocabularyImpl
class	ControlledVocabularyImpl
class	EntityReferenceTypeVocabularyImpl
class	EvidenceCodeVocabularyImpl
class	ExperimentalFormVocabularyImpl
class	InteractionVocabularyImpl
class	PhenotypeVocabularyImpl
class	RelationshipTypeVocabularyImpl
class	SequenceModificationVocabularyImpl
class	SequenceRegionVocabularyImpl
class	TissueVocabularyImpl

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type ControlledVocabulary

Modifier and Type	Method	Description
Class<? extends ControlledVocabulary>	ControlledVocabularyImpl.getModelInterface()

Uses of ControlledVocabulary in org.biopax.paxtools.model.level3

Subinterfaces of ControlledVocabulary in org.biopax.paxtools.model.level3

Modifier and Type	Interface	Description
interface	CellularLocationVocabulary	Definition: A reference to the Gene Ontology Cellular Component (GO CC) ontology.
interface	CellVocabulary	Definition: A reference to the Cell Type Ontology (CL).
interface	EntityReferenceTypeVocabulary	Definiiton: A reference to a term from an entity reference group ontology.
interface	EvidenceCodeVocabulary	Definition: A reference to the PSI Molecular Interaction ontology experimental method types, including "interaction detection method", "participant identification method", "feature detection method".
interface	ExperimentalFormVocabulary	Definition: A term that describes the form of the physical entity in the context of the experiment.
interface	InteractionVocabulary	A reference to the PSI Molecular Interaction ontology (MI) interaction type.
interface	PhenotypeVocabulary
interface	RelationshipTypeVocabulary	Vocabulary for defining relationship Xref types.
interface	SequenceModificationVocabulary	Definition: A term that describes the covalent modifications to an amino acid or nucleic acid chain.
interface	SequenceRegionVocabulary	Definition: A reference to a controlled vocabulary of sequence regions, such as InterPro or Sequence Ontology (SO) Homepage at http://www.sequenceontology.org.
interface	TissueVocabulary	Definition: A reference to the BRENDA