Package org.biopax.paxtools.model.level3
Interface DnaReference
- All Superinterfaces:
BioPAXElement,Cloneable,EntityReference,Level3Element,Named,NucleicAcidReference,Observable,SequenceEntityReference,Serializable,UtilityClass,XReferrable
- All Known Implementing Classes:
DnaReferenceImpl
A DNA reference is a grouping of several DNA entities that are common in
sequence and genomic position. Members can differ in celular location,
sequence features, SNPs, mutations and bound partners. For more detailed
information on semantics see
EntityReference.
Comments : Note that this is not a reference gene. A gene can possibly span
multiple DNA molecules, sometimes even across chromosomes due to regulatory
regions. Similarly a gene is not necessarily made up of deoxyribonucleic acid
and can be present in multiple copies ( which are different DNA molecules).-
Field Summary
Fields inherited from interface org.biopax.paxtools.model.BioPAXElement
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT -
Method Summary
Methods inherited from interface org.biopax.paxtools.model.BioPAXElement
equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalentMethods inherited from interface org.biopax.paxtools.model.level3.EntityReference
addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReferenceMethods inherited from interface org.biopax.paxtools.model.level3.Level3Element
addComment, getComment, removeCommentMethods inherited from interface org.biopax.paxtools.model.level3.Named
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardNameMethods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidReference
addSubRegion, getSubRegion, removeSubRegionMethods inherited from interface org.biopax.paxtools.model.level3.Observable
addEvidence, getEvidence, removeEvidenceMethods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference
getOrganism, getSequence, setOrganism, setSequenceMethods inherited from interface org.biopax.paxtools.model.level3.XReferrable
addXref, getXref, removeXref