Uses of Interface
org.biopax.paxtools.controller.Visitor

Packages that use Visitor

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.converter	This package contains a tools for upgrading BioPAX L1 and L2 to L3.

Uses of Visitor in org.biopax.paxtools.controller

Classes in org.biopax.paxtools.controller that implement Visitor

Modifier and Type	Class	Description
class	AbstractTraverser	This is an all-in-one Traverser/Visitor combination to use when deep recursive visiting is required.
class	Cloner	Specifically "Clones" the BioPAX elements set (traverses to obtain dependent elements), puts them to the new model using the visitor and traverser framework; ignores elements that are not in the source list (compare to Fetcher).
class	Completer	This class is used for getting a valid subgraph from a set of BioPAX elements.
class	Merger	Utility class to merge multiple biopax models into one.
class	ShallowCopy	"Clones" a BioPAX element - using direct properties and dependent children only.

Fields in org.biopax.paxtools.controller declared as Visitor

Modifier and Type	Field	Description
protected Visitor	Traverser.visitor

Methods in org.biopax.paxtools.controller that return Visitor

Modifier and Type	Method	Description
Visitor	Traverser.getVisitor()

Methods in org.biopax.paxtools.controller with parameters of type Visitor

Modifier and Type	Method	Description
void	Traverser.setVisitor(Visitor visitor)

Constructors in org.biopax.paxtools.controller with parameters of type Visitor

Modifier	Constructor	Description
	Traverser(EditorMap editorMap, Visitor visitor, Filter<PropertyEditor>... filters)	The full constructor.
	TraverserBilinked(EditorMap editorMap, Visitor visitor, PropertyFilterBilinked... filters)	Constructor.

Uses of Visitor in org.biopax.paxtools.converter

Classes in org.biopax.paxtools.converter that implement Visitor

Modifier and Type	Class	Description
final class	LevelUpgrader	Upgrades BioPAX L1 and L2 to Level 3.