Uses of Interface
org.biopax.paxtools.controller.PropertyEditor

Packages that use PropertyEditor

Package	Description
org.biopax.paxtools.command	This package contains classes for implementing undoable editing the model.
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.converter	This package contains a tools for upgrading BioPAX L1 and L2 to L3.
org.biopax.paxtools.io	This package contains classes that handle IO operations including reading and writing BioPAX from files and streams..

Uses of PropertyEditor in org.biopax.paxtools.command

Methods in org.biopax.paxtools.command with parameters of type PropertyEditor

Modifier and Type	Method	Description
void	CommandManager.addProperty(BioPAXElement bpe, PropertyEditor editor, Object value)
void	CommandManager.removeProperty(BioPAXElement bpe, PropertyEditor editor, Object value)

Uses of PropertyEditor in org.biopax.paxtools.controller

Subinterfaces of PropertyEditor in org.biopax.paxtools.controller

Modifier and Type	Interface	Description
interface	DataPropertyEditor<D extends BioPAXElement,R>	Created by igor on 13/08/15.

Classes in org.biopax.paxtools.controller that implement PropertyEditor

Modifier and Type	Class	Description
class	AbstractPropertyEditor<D extends BioPAXElement,R>	This is the base class for all property editors.
class	EnumeratedPropertyEditor<D extends BioPAXElement,R extends Enum>	Provides an ENUM class compatible editor by extending the PropertyEditor.
class	ObjectPropertyEditor<D extends BioPAXElement,R extends BioPAXElement>	Provides an editor for all object value types, e.g.
class	PrimitivePropertyEditor<D extends BioPAXElement,R>	Provides a primitive (int, float, double) class compatible editor by extending the PropertyEditor.
class	StringPropertyEditor<D extends BioPAXElement>	Provides an String class compatible editor by extending the PropertyEditor.

Fields in org.biopax.paxtools.controller with type parameters of type PropertyEditor

Modifier and Type	Field	Description
protected final Map<Class<? extends BioPAXElement>,Map<String,PropertyEditor>>	EditorMapImpl.classToEditorMap	A map from classes to their registered editors.
protected final Map<Class<? extends BioPAXElement>,Set<PropertyEditor>>	EditorMapImpl.classToEditorSet	Another map to keep editors as a set rather than a map.
static final Filter<PropertyEditor>	Fetcher.evidenceFilter	A property filter to ignore 'evidence' ('EVIDENCE' in L2) property (it can eventually lead to other organism, experimental entities)
static final Filter<PropertyEditor>	Fetcher.nextStepFilter	This property filter can be used to ignore 'nextStep' ('NEXT-STEP' in L2) property when fetching a sub-graph of child biopax elements, because using this property can eventually lead outside current pathway context into peer pathways, etc.
static final Filter<PropertyEditor>	Fetcher.objectPropertiesOnlyFilter	A property filter to visit only biopax object type properties.
protected final Map<String,Set<PropertyEditor>>	EditorMapImpl.propertyToEditorMap	A map from property names to actual property editors.

Methods in org.biopax.paxtools.controller that return PropertyEditor

Modifier and Type	Method	Description
protected PropertyEditor	EditorMapImpl.createAndRegisterBeanEditor(String pName, Class domain, Map<Class<? extends BioPAXElement>,Set<Class<? extends BioPAXElement>>> rRestrictions)
static <D extends BioPAXElement, R> PropertyEditor<D,R>	AbstractPropertyEditor.createPropertyEditor(Class<D> domain, String property)	This method creates a property reflecting on the domain and property.
<D extends BioPAXElement> PropertyEditor<? super D,?>	EditorMap.getEditorForProperty(String property, Class<D> javaClass)	This method returns the editor intended to handle property named property of a class (javaClass).
<D extends BioPAXElement> PropertyEditor<? super D,?>	EditorMapImpl.getEditorForProperty(String property, Class<D> javaClass)
<D extends BioPAXElement> PropertyEditor<? super D,?>	SimpleEditorMap.getEditorForProperty(String property, Class<D> javaClass)

Methods in org.biopax.paxtools.controller that return types with arguments of type PropertyEditor

Modifier and Type	Method	Description
Set<PropertyEditor>	EditorMap.getEditorsForProperty(String property)	This method returns the set of editors intended to handle property named property.
Set<PropertyEditor>	EditorMapImpl.getEditorsForProperty(String property)
Set<PropertyEditor>	SimpleEditorMap.getEditorsForProperty(String property)
Set<PropertyEditor>	EditorMap.getEditorsOf(Class<? extends BioPAXElement> domain)	This method returns the set of editors whose domain subsumes the given class
Set<PropertyEditor>	EditorMap.getEditorsOf(BioPAXElement bpe)	This method returns the set of editors whose domain subsumes the class of given BioPAX element.
Set<PropertyEditor>	EditorMapImpl.getEditorsOf(Class<? extends BioPAXElement> domain)
Set<PropertyEditor>	EditorMapImpl.getEditorsOf(BioPAXElement bpe)
Set<PropertyEditor>	SimpleEditorMap.getEditorsOf(Class<? extends BioPAXElement> domain)
Set<PropertyEditor>	SimpleEditorMap.getEditorsOf(BioPAXElement bpe)
<D extends BioPAXElement> Set<PropertyEditor<? extends D,?>>	EditorMap.getSubclassEditorsForProperty(String property, Class<D> domain)	This method returns the set of editors intended to handle property named property.
<D extends BioPAXElement> Set<PropertyEditor<? extends D,?>>	EditorMapImpl.getSubclassEditorsForProperty(String property, Class<D> domain)
<D extends BioPAXElement> Set<PropertyEditor<? extends D,?>>	SimpleEditorMap.getSubclassEditorsForProperty(String property, Class<D> domain)
Iterator<PropertyEditor>	EditorMap.iterator()
Iterator<PropertyEditor>	EditorMapImpl.iterator()
Iterator<PropertyEditor>	SimpleEditorMap.iterator()

Methods in org.biopax.paxtools.controller with parameters of type PropertyEditor

Modifier and Type	Method	Description
protected boolean	Traverser.filter(PropertyEditor<?,?> editor)
boolean	PropertyFilterBilinked.filterInverse(PropertyEditor editor)
protected boolean	TraverserBilinked.filterInverse(PropertyEditor editor)
protected void	EditorMapImpl.registerEditorsWithSubClasses(PropertyEditor editor, Class<? extends BioPAXElement> domain)	This method registers an editor with sub classes - i.e.
protected void	Traverser.traverseElements(BioPAXElement element, Model model, PropertyEditor<?,?> editor, Set<?> valueSet)
protected abstract void	AbstractTraverser.visit(Object range, BioPAXElement domain, Model model, PropertyEditor<?,?> editor)	This is to implement a real action here: do something, return or even to continue (traverse) into the child (range) element's properties if it's a BioPAX object.
void	AbstractTraverser.visit(BioPAXElement domain, Object range, Model model, PropertyEditor<?,?> editor)	Calls the protected abstract method visit that is to be implemented in subclasses of this abstract class.
void	Cloner.visit(BioPAXElement domain, Object range, Model targetModel, PropertyEditor editor)
void	Completer.visit(BioPAXElement domain, Object range, Model model, PropertyEditor editor)
void	Merger.visit(BioPAXElement domain, Object range, Model model, PropertyEditor editor)	Checks whether model contains bpe element, and if it does, then it updates the value of the equivalent element for bpe by using the specific editor.
void	ShallowCopy.visit(BioPAXElement domain, Object range, Model model, PropertyEditor editor)	An implementation of this method should perform a BioPAX element and editor dependent operation on the model.
void	Visitor.visit(BioPAXElement domain, Object range, Model model, PropertyEditor<?,?> editor)	An implementation of this method should perform a BioPAX element and editor dependent operation on the model.

Uses of PropertyEditor in org.biopax.paxtools.converter

Methods in org.biopax.paxtools.converter with parameters of type PropertyEditor

Modifier and Type	Method	Description
protected void	LevelUpgrader.visit(Object value, BioPAXElement parent, Model newModel, PropertyEditor editor)

Uses of PropertyEditor in org.biopax.paxtools.io

Methods in org.biopax.paxtools.io with parameters of type PropertyEditor

Modifier and Type	Method	Description
protected void	BioPAXIOHandlerAdapter.bindValue(String valueString, PropertyEditor editor, BioPAXElement bpe, Model model)	This method binds the value to the bpe.