Package org.biopax.paxtools.controller

Class ReusedPEPHelper

java.lang.Object

org.biopax.paxtools.controller.ReusedPEPHelper

public class ReusedPEPHelper
extends Object

This class contains methods for handling reused PEPs - a historically common problem in BioPAX L2 exports. Note: This class might eventually be deprecated as this problem is mostly fixed and BioPAX L3 is making L2 obsolete.

Constructor Summary

Constructors

Constructor	Description
ReusedPEPHelper(Model model)

Method Summary

Modifier and Type	Method	Description
void	copyPEPFields()
Object	fixReusedPEP(physicalEntityParticipant pep, BioPAXElement bpe)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ReusedPEPHelper

public ReusedPEPHelper(Model model)

Parameters:

model - the biopax model

Method Details

fixReusedPEP

public Object fixReusedPEP(physicalEntityParticipant pep,
 BioPAXElement bpe)

copyPEPFields

public void copyPEPFields()