Uses of Interface
org.biopax.paxtools.util.Filter

Packages that use Filter

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.util	This package contains various collections and utilities that is used by the other packages and modules of paxtools.

Uses of Filter in org.biopax.paxtools.controller

Subinterfaces of Filter in org.biopax.paxtools.controller

Modifier and Type	Interface	Description
interface	PropertyFilterBilinked	A generic interface for bidirectional property filter

Fields in org.biopax.paxtools.controller declared as Filter

Modifier and Type	Field	Description
static final Filter<PropertyEditor>	Fetcher.evidenceFilter	A property filter to ignore 'evidence' ('EVIDENCE' in L2) property (it can eventually lead to other organism, experimental entities)
protected Filter<PropertyEditor>[]	Traverser.filters
static final Filter<PropertyEditor>	Fetcher.nextStepFilter	This property filter can be used to ignore 'nextStep' ('NEXT-STEP' in L2) property when fetching a sub-graph of child biopax elements, because using this property can eventually lead outside current pathway context into peer pathways, etc.
static final Filter<PropertyEditor>	Fetcher.objectPropertiesOnlyFilter	A property filter to visit only biopax object type properties.

Methods in org.biopax.paxtools.controller with parameters of type Filter

Modifier and Type	Method	Description
static Model	ModelUtils.getAllChildren(BioPAXElement bpe, Filter<PropertyEditor>... filters)	Deprecated. use Fetcher.fetch(BioPAXElement, Model) instead (with Fetcher.nextStepFilter or without)
static Set<String>	ModelUtils.getKeywords(BioPAXElement biopaxElement, int depth, Filter<DataPropertyEditor>... dataPropertyFilters)	Collects data type (not object) property values (can be then used for full-text indexing).

Constructors in org.biopax.paxtools.controller with parameters of type Filter

Modifier	Constructor	Description
	AbstractTraverser(EditorMap editorMap, Filter<PropertyEditor>... filters)
	Fetcher(EditorMap editorMap, Filter<PropertyEditor>... filters)	Constructor.
	SimpleMerger(EditorMap map, Filter<BioPAXElement> mergePropOf)
	Traverser(EditorMap editorMap, Visitor visitor, Filter<PropertyEditor>... filters)	The full constructor.

Uses of Filter in org.biopax.paxtools.util

Classes in org.biopax.paxtools.util that implement Filter

Modifier and Type	Class	Description
class	AbstractFilterSet<F,E>	Base class for implementing various filter sets.
class	ClassFilterSet<E,F extends E>	A FilterSet that filters based on the class.