Uses of Interface
org.biopax.paxtools.model.level3.Stoichiometry

Packages that use Stoichiometry

Package	Description
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of Stoichiometry in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement Stoichiometry

Modifier and Type	Class	Description
class	StoichiometryImpl

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type Stoichiometry

Modifier and Type	Method	Description
Set<Stoichiometry>	ComplexImpl.getComponentStoichiometry()
Class<? extends Stoichiometry>	StoichiometryImpl.getModelInterface()
Set<Stoichiometry>	ConversionImpl.getParticipantStoichiometry()

Methods in org.biopax.paxtools.impl.level3 with parameters of type Stoichiometry

Modifier and Type	Method	Description
void	ComplexImpl.addComponentStoichiometry(Stoichiometry stoichiometry)
void	ConversionImpl.addParticipantStoichiometry(Stoichiometry participantStoichiometry)
void	ComplexImpl.removeComponentStoichiometry(Stoichiometry stoichiometry)
void	ConversionImpl.removeParticipantStoichiometry(Stoichiometry participantStoichiometry)

Method parameters in org.biopax.paxtools.impl.level3 with type arguments of type Stoichiometry

Modifier and Type	Method	Description
protected void	ComplexImpl.setComponentStoichiometry(Set<Stoichiometry> stoichiometry)

Uses of Stoichiometry in org.biopax.paxtools.model.level3

Methods in org.biopax.paxtools.model.level3 that return types with arguments of type Stoichiometry

Modifier and Type	Method	Description
Set<Stoichiometry>	Complex.getComponentStoichiometry()	The stoichiometry of components in a complex.
Set<Stoichiometry>	Conversion.getParticipantStoichiometry()	Stoichiometry of the left (Conversion.getLeft()) and right(Conversion.getRight()) participants.

Methods in org.biopax.paxtools.model.level3 with parameters of type Stoichiometry

Modifier and Type	Method	Description
void	Complex.addComponentStoichiometry(Stoichiometry stoichiometry)	The stoichiometry of components in a complex.
void	Conversion.addParticipantStoichiometry(Stoichiometry stoichiometry)	This method adds a stoichiometry for one of the participants of this conversion.
void	Complex.removeComponentStoichiometry(Stoichiometry stoichiometry)	The stoichiometry of components in a complex.
void	Conversion.removeParticipantStoichiometry(Stoichiometry stoichiometry)	This method removes a stoichiometry for one of the participants of this conversion.