Package org.biopax.paxtools.model.level3
Interface Degradation
- All Superinterfaces:
BioPAXElement,Cloneable,Conversion,Entity,Interaction,Level3Element,Named,Observable,Process,Serializable,XReferrable
- All Known Implementing Classes:
DegradationImpl
Definition: A conversion in which a pool of macromolecules are degraded into their elementary
units.
Usage: This conversion always has a direction of left-to-right and is irreversible. Degraded
molecules are always represented on the left, degradation products on the right.
Comments: Degradation is a complex abstraction over multiple reactions. Although it obeys law of
mass conservation and stoichiometric, the products are rarely specified since they are
ubiquitous.
Example: Degradation of a protein to amino acids.
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Field Summary
Fields inherited from interface org.biopax.paxtools.model.BioPAXElement
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT -
Method Summary
Methods inherited from interface org.biopax.paxtools.model.BioPAXElement
equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalentMethods inherited from interface org.biopax.paxtools.model.level3.Conversion
addLeft, addParticipantStoichiometry, addRight, getConversionDirection, getLeft, getParticipantStoichiometry, getRight, getSpontaneous, removeLeft, removeParticipantStoichiometry, removeRight, setConversionDirection, setSpontaneousMethods inherited from interface org.biopax.paxtools.model.level3.Entity
addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSourceMethods inherited from interface org.biopax.paxtools.model.level3.Interaction
addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipantMethods inherited from interface org.biopax.paxtools.model.level3.Level3Element
addComment, getComment, removeCommentMethods inherited from interface org.biopax.paxtools.model.level3.Named
addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardNameMethods inherited from interface org.biopax.paxtools.model.level3.Observable
addEvidence, getEvidence, removeEvidenceMethods inherited from interface org.biopax.paxtools.model.level3.Process
getControlledOf, getPathwayComponentOf, getStepProcessOfMethods inherited from interface org.biopax.paxtools.model.level3.XReferrable
addXref, getXref, removeXref