Package org.biopax.paxtools.model.level2

Interface pathway

All Superinterfaces:

BioPAXElement, Cloneable, entity, InteractionParticipant, Level2Element, pathwayComponent, process, Serializable, XReferrable

public interface pathway
extends process

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method	Description
void	addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
bioSource	getORGANISM()
Set<pathwayComponent>	getPATHWAY_COMPONENTS()
void	removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
void	setORGANISM(bioSource ORGANISM)
void	setPATHWAY_COMPONENTS(Set<pathwayComponent> PATHWAY_COMPONENTS)

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Method Details

addPATHWAY_COMPONENTS

void addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

getORGANISM

bioSource getORGANISM()

getPATHWAY_COMPONENTS

Set<pathwayComponent> getPATHWAY_COMPONENTS()

removePATHWAY_COMPONENTS

void removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

setORGANISM

void setORGANISM(bioSource ORGANISM)

setPATHWAY_COMPONENTS

void setPATHWAY_COMPONENTS(Set<pathwayComponent> PATHWAY_COMPONENTS)