Package org.biopax.paxtools.model.level2

Interface conversion

All Superinterfaces:

BioPAXElement, Cloneable, entity, interaction, InteractionParticipant, Level2Element, pathwayComponent, physicalInteraction, process, Serializable, XReferrable

All Known Subinterfaces:

biochemicalReaction, complexAssembly, transport, transportWithBiochemicalReaction

public interface conversion
extends physicalInteraction

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method	Description
void	addLEFT(physicalEntityParticipant LEFT)
void	addRIGHT(physicalEntityParticipant RIGHT)
Set<physicalEntityParticipant>	getLEFT()
Set<physicalEntityParticipant>	getRIGHT()
SpontaneousType	getSPONTANEOUS()
void	removeLEFT(physicalEntityParticipant LEFT)
void	removeRIGHT(physicalEntityParticipant RIGHT)
void	setLEFT(Set<physicalEntityParticipant> LEFT)
void	setRIGHT(Set<physicalEntityParticipant> RIGHT)
void	setSPONTANEOUS(SpontaneousType SPONTANEOUS)

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.level2.physicalInteraction

addINTERACTION_TYPE, getINTERACTION_TYPE, removeINTERACTION_TYPE, setINTERACTION_TYPE

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Method Details

getLEFT

Set<physicalEntityParticipant> getLEFT()

getRIGHT

Set<physicalEntityParticipant> getRIGHT()

getSPONTANEOUS

SpontaneousType getSPONTANEOUS()

addLEFT

void addLEFT(physicalEntityParticipant LEFT)

addRIGHT

void addRIGHT(physicalEntityParticipant RIGHT)

removeLEFT

void removeLEFT(physicalEntityParticipant LEFT)

removeRIGHT

void removeRIGHT(physicalEntityParticipant RIGHT)

setLEFT

void setLEFT(Set<physicalEntityParticipant> LEFT)

setRIGHT

void setRIGHT(Set<physicalEntityParticipant> RIGHT)

setSPONTANEOUS

void setSPONTANEOUS(SpontaneousType SPONTANEOUS)