Uses of Interface
org.biopax.paxtools.model.level2.pathwayComponent

Packages that use pathwayComponent

Package	Description
org.biopax.paxtools.model.level2	This package contains the interfaces that maps to the BioPAX level 2 specification.

Uses of pathwayComponent in org.biopax.paxtools.model.level2

Subinterfaces of pathwayComponent in org.biopax.paxtools.model.level2

Modifier and Type	Interface	Description
interface	biochemicalReaction	A conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products).
interface	catalysis	A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy.
interface	complexAssembly	A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.
interface	control
interface	conversion
interface	interaction
interface	modulation	get controlled should be catalysis
interface	pathway
interface	pathwayStep	This represents a set of pathway events.
interface	physicalInteraction
interface	process	Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction
interface	transport
interface	transportWithBiochemicalReaction

Methods in org.biopax.paxtools.model.level2 that return types with arguments of type pathwayComponent

Modifier and Type	Method	Description
Set<pathwayComponent>	pathway.getPATHWAY_COMPONENTS()

Methods in org.biopax.paxtools.model.level2 with parameters of type pathwayComponent

Modifier and Type	Method	Description
void	pathway.addPATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)
void	pathway.removePATHWAY_COMPONENTS(pathwayComponent PATHWAY_COMPONENT)

Method parameters in org.biopax.paxtools.model.level2 with type arguments of type pathwayComponent

Modifier and Type	Method	Description
void	pathway.setPATHWAY_COMPONENTS(Set<pathwayComponent> PATHWAY_COMPONENTS)