Uses of Enum Class
org.biopax.paxtools.model.BioPAXLevel

Packages that use BioPAXLevel

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.impl	This package contains the default BioPAX Model implementations.
org.biopax.paxtools.io	This package contains classes that handle IO operations including reading and writing BioPAX from files and streams..
org.biopax.paxtools.model	This package contains the interfaces that maps to the OWL classes defined in the BioPAX specification.

Uses of BioPAXLevel in org.biopax.paxtools.controller

Fields in org.biopax.paxtools.controller declared as BioPAXLevel

Modifier and Type	Field	Description
protected final BioPAXLevel	EditorMapImpl.level

Methods in org.biopax.paxtools.controller that return BioPAXLevel

Modifier and Type	Method	Description
BioPAXLevel	EditorMap.getLevel()	Returns the BioPAX level for which editor map is created.
BioPAXLevel	EditorMapImpl.getLevel()
BioPAXLevel	SimpleEditorMap.getLevel()

Methods in org.biopax.paxtools.controller with parameters of type BioPAXLevel

Modifier and Type	Method	Description
static EditorMap	SimpleEditorMap.buildCustomEditorMap(BioPAXLevel level, InputStream stream)
static SimpleEditorMap	SimpleEditorMap.get(BioPAXLevel level)	To obtain a copy of the editor map for the corresponding level, use the

Constructors in org.biopax.paxtools.controller with parameters of type BioPAXLevel

Modifier	Constructor	Description
	EditorMapImpl(BioPAXLevel level)
	PathAccessor(String path, BioPAXLevel level)	Constructor for defining the access path via a XPath like string.
	PathAccessor(List<PropertyAccessor<? extends BioPAXElement,?>> objectAccessors, BioPAXLevel level)	Constructor for defining the access path with a list of accessors.
	ShallowCopy(BioPAXLevel level)	BioPAXLevel based constructor

Uses of BioPAXLevel in org.biopax.paxtools.impl

Methods in org.biopax.paxtools.impl that return BioPAXLevel

Modifier and Type	Method	Description
BioPAXLevel	MockFactory.getLevel()
BioPAXLevel	ModelImpl.getLevel()

Constructors in org.biopax.paxtools.impl with parameters of type BioPAXLevel

Modifier	Constructor	Description
	MockFactory(BioPAXLevel level)
protected	ModelImpl(BioPAXLevel level)

Uses of BioPAXLevel in org.biopax.paxtools.io

Fields in org.biopax.paxtools.io declared as BioPAXLevel

Modifier and Type	Field	Description
protected BioPAXLevel	BioPAXIOHandlerAdapter.level

Methods in org.biopax.paxtools.io that return BioPAXLevel

Modifier and Type	Method	Description
BioPAXLevel	BioPAXIOHandler.getLevel()
BioPAXLevel	BioPAXIOHandlerAdapter.getLevel()

Methods in org.biopax.paxtools.io with parameters of type BioPAXLevel

Modifier and Type	Method	Description
protected final void	BioPAXIOHandlerAdapter.resetLevel(BioPAXLevel level, BioPAXFactory factory)	Updates the level and factory for this I/O (final - because used in the constructor)

Constructors in org.biopax.paxtools.io with parameters of type BioPAXLevel

Modifier	Constructor	Description
	BioPAXIOHandlerAdapter(BioPAXFactory factory, BioPAXLevel level)
	BioPAXIOHandlerAdapter(BioPAXLevel level)
	SimpleIOHandler(BioPAXFactory factory, BioPAXLevel level)	Full constructor
	SimpleIOHandler(BioPAXLevel level)	Basic constructor, defaults to level.defaultFactory

Uses of BioPAXLevel in org.biopax.paxtools.model

Methods in org.biopax.paxtools.model that return BioPAXLevel

Modifier and Type	Method	Description
abstract BioPAXLevel	BioPAXFactory.getLevel()	Gets the level.
BioPAXLevel	Model.getLevel()	This method returns the level of the objects that are contained within this model.
static BioPAXLevel	BioPAXLevel.getLevelFromNameSpace(String namespace)
static BioPAXLevel	BioPAXLevel.valueOf(String name)	Returns the enum constant of this class with the specified name.
static BioPAXLevel[]	BioPAXLevel.values()	Returns an array containing the constants of this enum class, in the order they are declared.