Package org.biopax.paxtools.impl.level3

package org.biopax.paxtools.impl.level3

This package contains the default implementation for BioPAX Level 3.

Related Packages

Package	Description
org.biopax.paxtools.impl	This package contains the default BioPAX Model implementations.
org.biopax.paxtools.impl.level2	This package contains the default implementation for BioPAX Level 2.

Classes

Class	Description
BindingFeatureImpl
BiochemicalPathwayStepImpl
BiochemicalReactionImpl
BioSourceImpl
CatalysisImpl
CellularLocationVocabularyImpl
CellVocabularyImpl
ChemicalConstantImpl
ChemicalStructureImpl
ComplexAssemblyImpl
ComplexImpl
ControlImpl
ControlledVocabularyImpl
ConversionImpl
CovalentBindingFeatureImpl
DegradationImpl
DeltaGImpl
DnaImpl
DnaReferenceImpl
DnaRegionImpl
DnaRegionReferenceImpl
EntityFeatureImpl
EntityImpl
EntityReferenceImpl
EntityReferenceTypeVocabularyImpl
EvidenceCodeVocabularyImpl
EvidenceImpl
ExperimentalFormImpl
ExperimentalFormVocabularyImpl
FragmentFeatureImpl
GeneImpl
GeneticInteractionImpl
InteractionImpl
InteractionVocabularyImpl
KPrimeImpl
L3ElementImpl	Base BioPAX Level3 element.
ModificationFeatureImpl
ModulationImpl
MolecularInteractionImpl
NamedImpl
NucleicAcidImpl
NucleicAcidReferenceImpl
NucleicAcidRegionReferenceImpl
PathwayImpl
PathwayStepImpl
PhenotypeVocabularyImpl
PhysicalEntityImpl
ProcessImpl
ProteinImpl
ProteinReferenceImpl
ProvenanceImpl
PublicationXrefImpl
RelationshipTypeVocabularyImpl
RelationshipXrefImpl
RnaImpl
RnaReferenceImpl
RnaRegionImpl
RnaRegionReferenceImpl
ScoreImpl
SequenceEntityReferenceImpl
SequenceIntervalImpl
SequenceLocationImpl
SequenceModificationVocabularyImpl
SequenceRegionVocabularyImpl
SequenceSiteImpl
SimplePhysicalEntityImpl
SmallMoleculeImpl
SmallMoleculeReferenceImpl
StoichiometryImpl
TemplateReactionImpl
TemplateReactionRegulationImpl
TissueVocabularyImpl
TransportImpl
TransportWithBiochemicalReactionImpl
UnificationXrefImpl
XReferrableImpl	This class helps with managing the bidirectional xref links.
XrefImpl