Package org.biopax.paxtools.impl.level3

Class DnaRegionReferenceImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XReferrableImpl

org.biopax.paxtools.impl.level3.NamedImpl

org.biopax.paxtools.impl.level3.EntityReferenceImpl

org.biopax.paxtools.impl.level3.SequenceEntityReferenceImpl

org.biopax.paxtools.impl.level3.NucleicAcidReferenceImpl

org.biopax.paxtools.impl.level3.NucleicAcidRegionReferenceImpl

org.biopax.paxtools.impl.level3.DnaRegionReferenceImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, DnaRegionReference, EntityReference, Level3Element, Named, NucleicAcidReference, NucleicAcidRegionReference, Observable, SequenceEntityReference, UtilityClass, XReferrable

public class DnaRegionReferenceImpl
extends NucleicAcidRegionReferenceImpl
implements DnaRegionReference

See Also:

• Serialized Form

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor	Description
DnaRegionReferenceImpl()

Method Summary

Modifier and Type	Method	Description
Class<? extends DnaRegionReference>	getModelInterface()	This method returns the actual model interface that a class implements.

Methods inherited from class org.biopax.paxtools.impl.level3.NucleicAcidRegionReferenceImpl

addRegionType, getAbsoluteRegion, getRegionType, getSubRegionOf, removeRegionType, setAbsoluteRegion

Methods inherited from class org.biopax.paxtools.impl.level3.NucleicAcidReferenceImpl

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from class org.biopax.paxtools.impl.level3.SequenceEntityReferenceImpl

equivalenceCode, getOrganism, getSequence, semanticallyEquivalent, setOrganism, setSequence

Methods inherited from class org.biopax.paxtools.impl.level3.EntityReferenceImpl

addEntityFeature, addEntityReferenceType, addEvidence, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getEvidence, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeEvidence, removeMemberEntityReference

Methods inherited from class org.biopax.paxtools.impl.level3.NamedImpl

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, getXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getUri, hashCode, isEquivalent, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.EntityReference

addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidReference

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidRegionReference

addRegionType, getAbsoluteRegion, getRegionType, getSubRegionOf, removeRegionType, setAbsoluteRegion

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference

getOrganism, getSequence, setOrganism, setSequence

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Constructor Details

DnaRegionReferenceImpl

public DnaRegionReferenceImpl()

Method Details

getModelInterface

public Class<? extends DnaRegionReference> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class EntityReferenceImpl

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.