Uses of Package
org.biopax.paxtools.controller

Packages that use org.biopax.paxtools.controller

Package	Description
org.biopax.paxtools.command	This package contains classes for implementing undoable editing the model.
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.converter	This package contains a tools for upgrading BioPAX L1 and L2 to L3.
org.biopax.paxtools.impl	This package contains the default BioPAX Model implementations.
org.biopax.paxtools.io	This package contains classes that handle IO operations including reading and writing BioPAX from files and streams..

Classes in org.biopax.paxtools.controller used by org.biopax.paxtools.command

Class	Description
PropertyEditor

Classes in org.biopax.paxtools.controller used by org.biopax.paxtools.controller

Class	Description
AbstractPropertyEditor	This is the base class for all property editors.
ConversionScore	Encapsulation of scores of conversions, and related information
DataPropertyEditor	Created by igor on 13/08/15.
DecoratingPropertyAccessor
EditorMap	This class contains methods that eases to use editors for specific or a set of property.
IdFetcher	Tries to get preferred type IDs of an entity reference.
ObjectPropertyEditor	Provides an editor for all object value types, e.g.
PropertyAccessor	Allows generic access to the properties or a path of properties from a bean.
PropertyAccessorAdapter	Adapter class for all property accessors.
PropertyEditor
PropertyFilterBilinked	A generic interface for bidirectional property filter
SimpleEditorMap	Provides a simple editor map for a level with a given factory.
SimplePropertyAccessor
TransitivePropertyAccessor	This class is a transitive decorator for PropertyAccessors.
Traverser	This is a utility class for traversing over the dependent objects of a biopax element, based on property editors
TraverserBilinked	A bi-directional BioPAX properties traverser.
Visitor	Basic visitor interface for classes using Traverser.

Classes in org.biopax.paxtools.controller used by org.biopax.paxtools.converter

Class	Description
AbstractTraverser	This is an all-in-one Traverser/Visitor combination to use when deep recursive visiting is required.
ModelFilter	A generic filter interface for Models.
PropertyEditor
Traverser	This is a utility class for traversing over the dependent objects of a biopax element, based on property editors
Visitor	Basic visitor interface for classes using Traverser.

Classes in org.biopax.paxtools.controller used by org.biopax.paxtools.impl

Class	Description
ObjectPropertyEditor	Provides an editor for all object value types, e.g.

Classes in org.biopax.paxtools.controller used by org.biopax.paxtools.io

Class	Description
EditorMap	This class contains methods that eases to use editors for specific or a set of property.
PropertyEditor
ReusedPEPHelper	This class contains methods for handling reused PEPs - a historically common problem in BioPAX L2 exports.
StringPropertyEditor	Provides an String class compatible editor by extending the PropertyEditor.