Package org.biopax.paxtools.controller

Class TraverserBilinked

java.lang.Object

org.biopax.paxtools.controller.Traverser

org.biopax.paxtools.controller.TraverserBilinked

public class TraverserBilinked
extends Traverser

A bi-directional BioPAX properties traverser. To traverse both biopax element's standard properties, such as 'xref', and (Paxtools') inverse properties, such as 'xrefOf', etc.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.controller.Traverser

editorMap, filters, visitor

Constructor Summary

Constructors

Constructor	Description
TraverserBilinked(EditorMap editorMap, Visitor visitor, PropertyFilterBilinked... filters)	Constructor.

Method Summary

Modifier and Type	Method	Description
protected boolean	filterInverse(PropertyEditor editor)
boolean	isInverseOnly()
void	setInverseOnly(boolean isInverseOnly)
void	traverse(BioPAXElement element, Model model)	Traverse and visit Visitor all properties of the element.

Methods inherited from class org.biopax.paxtools.controller.Traverser

filter, getVisitor, setVisitor, traverseElements

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TraverserBilinked

public TraverserBilinked(EditorMap editorMap,
 Visitor visitor,
 PropertyFilterBilinked... filters)

Constructor.

Parameters:

editorMap - biopax property editors map

visitor - user's implementation; if it recursively calls traverse(BioPAXElement, Model) method, then care must be taken to prevent infinite loops.

filters - bidirectional property filters

Method Details

isInverseOnly

public boolean isInverseOnly()

setInverseOnly

public void setInverseOnly(boolean isInverseOnly)

traverse

public void traverse(BioPAXElement element,
 Model model)

Description copied from class: Traverser

Traverse and visit Visitor all properties of the element. This method does not traverse iteratively to the values.

Overrides:

traverse in class Traverser

Parameters:

element - BioPAX element to be traversed

model - to be traversed, but not necessarily (depends on the Visitor implementation).

filterInverse

protected boolean filterInverse(PropertyEditor editor)