Package org.biopax.paxtools.controller

Class ConversionScore

java.lang.Object

org.biopax.paxtools.controller.ConversionScore

All Implemented Interfaces:

Comparable

public class ConversionScore
extends Object
implements Comparable

Encapsulation of scores of conversions, and related information

Author:

rodche //TODO Annotate

Constructor Summary

Constructors

Constructor	Description
ConversionScore(conversion conv1, conversion conv2, Double score, Map<physicalEntityParticipant,physicalEntityParticipant> pepMap, boolean reverseMatch)

Method Summary

Modifier and Type	Method	Description
int	compareTo(Object obj)
conversion	getConversion1()
conversion	getConversion2()
physicalEntityParticipant	getMatch(physicalEntityParticipant pep1)
Set<physicalEntityParticipant>	getMatchedPEPs()
Double	getScore()
boolean	isReverseMatch()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ConversionScore

public ConversionScore(conversion conv1,
 conversion conv2,
 Double score,
 Map<physicalEntityParticipant,physicalEntityParticipant> pepMap,
 boolean reverseMatch)

Method Details

getScore

public Double getScore()

getConversion1

public conversion getConversion1()

getConversion2

public conversion getConversion2()

isReverseMatch

public boolean isReverseMatch()

getMatch

public physicalEntityParticipant getMatch(physicalEntityParticipant pep1)

getMatchedPEPs

public Set<physicalEntityParticipant> getMatchedPEPs()

compareTo

public int compareTo(Object obj)

Specified by:

compareTo in interface Comparable