Uses of Package
org.biopax.paxtools.model

Packages that use org.biopax.paxtools.model

Package	Description
org.biopax.paxtools.command	This package contains classes for implementing undoable editing the model.
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.converter	This package contains a tools for upgrading BioPAX L1 and L2 to L3.
org.biopax.paxtools.impl	This package contains the default BioPAX Model implementations.
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.io	This package contains classes that handle IO operations including reading and writing BioPAX from files and streams..
org.biopax.paxtools.model	This package contains the interfaces that maps to the OWL classes defined in the BioPAX specification.
org.biopax.paxtools.model.level2	This package contains the interfaces that maps to the BioPAX level 2 specification.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
org.biopax.paxtools.util	This package contains various collections and utilities that is used by the other packages and modules of paxtools.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.command

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.controller

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
BioPAXFactory Abstract factory class for instantiating BioPAX classes.
BioPAXLevel Enumeration type for BioPAX levels.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.converter

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
BioPAXFactory Abstract factory class for instantiating BioPAX classes.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.impl

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
BioPAXFactory Abstract factory class for instantiating BioPAX classes.
BioPAXLevel Enumeration type for BioPAX levels.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.impl.level3

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.io

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
BioPAXFactory Abstract factory class for instantiating BioPAX classes.
BioPAXLevel Enumeration type for BioPAX levels.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.model

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.
BioPAXFactory Abstract factory class for instantiating BioPAX classes.
BioPAXLevel Enumeration type for BioPAX levels.
Model A model acts as a container for BioPAX elements.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.model.level2

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.model.level3

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.

Classes in org.biopax.paxtools.model used by org.biopax.paxtools.util

Class and Description
BioPAXElement This class represents a general BioPAXElement, regardless of Level.