| Package | Description |
|---|---|
| org.biopax.paxtools.impl.level3 |
This package contains the default implementation for BioPAX Level 3.
|
| org.biopax.paxtools.model.level3 |
This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.
|
| Modifier and Type | Class and Description |
|---|---|
class |
CatalysisImpl |
class |
ControlImpl |
class |
ModulationImpl |
class |
TemplateReactionRegulationImpl |
| Modifier and Type | Method and Description |
|---|---|
Set<Control> |
ProcessImpl.getControlledOf() |
Set<Control> |
PhysicalEntityImpl.getControllerOf() |
Set<Control> |
PathwayImpl.getControllerOf() |
Class<? extends Control> |
ControlImpl.getModelInterface() |
| Modifier and Type | Interface and Description |
|---|---|
interface |
Catalysis
Definition: A control interaction in which a physical entity (a catalyst) increases the rate of a conversion
interaction by lowering its activation energy.
|
interface |
Modulation
Definition: An interaction in which one entity regulates, modifies, or otherwise influences another.
|
interface |
TemplateReactionRegulation |
| Modifier and Type | Method and Description |
|---|---|
Set<Control> |
Process.getControlledOf() |
Set<Control> |
Controller.getControllerOf()
This method returns the list of
Control interactions that this entity controls. |
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