Uses of Interface
org.biopax.paxtools.model.level3.Pathway

Packages that use Pathway

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of Pathway in org.biopax.paxtools.controller

Methods in org.biopax.paxtools.controller that return types with arguments of type Pathway

Modifier and Type	Method and Description
static Set<Pathway>	ModelUtils.getParentPathways(BioPAXElement biopaxElement) Collects all parent Pathway objects recursively traversing the inverse object properties of the biopax element.

Uses of Pathway in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement Pathway

Modifier and Type	Class and Description
class	PathwayImpl

Methods in org.biopax.paxtools.impl.level3 that return Pathway

Modifier and Type	Method and Description
Pathway	PathwayStepImpl.getPathwayOrderOf()

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type Pathway

Modifier and Type	Method and Description
Class<? extends Pathway>	PathwayImpl.getModelInterface()
Set<Pathway>	ProcessImpl.getPathwayComponentOf()
protected Set<Pathway>	ControlImpl.getPathwayController()

Methods in org.biopax.paxtools.impl.level3 with parameters of type Pathway

Modifier and Type	Method and Description
protected void	PathwayStepImpl.setPathwayOrderOf(Pathway pathwayOrderOf)

Uses of Pathway in org.biopax.paxtools.model.level3

Methods in org.biopax.paxtools.model.level3 that return Pathway

Modifier and Type	Method and Description
Pathway	PathwayStep.getPathwayOrderOf()

Methods in org.biopax.paxtools.model.level3 that return types with arguments of type Pathway

Modifier and Type	Method and Description
Set<Pathway>	Process.getPathwayComponentOf()