Uses of Interface
org.biopax.paxtools.model.level3.Interaction

Packages that use Interaction

Package	Description
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of Interaction in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement Interaction

Modifier and Type	Class and Description
class	BiochemicalReactionImpl
class	CatalysisImpl
class	ComplexAssemblyImpl
class	ControlImpl
class	ConversionImpl
class	DegradationImpl
class	GeneticInteractionImpl
class	InteractionImpl
class	ModulationImpl
class	MolecularInteractionImpl
class	TemplateReactionImpl
class	TemplateReactionRegulationImpl
class	TransportImpl
class	TransportWithBiochemicalReactionImpl

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type Interaction

Modifier and Type	Method and Description
Class<? extends Interaction>	InteractionImpl.getModelInterface()
Set<Interaction>	EntityImpl.getParticipantOf()

Uses of Interaction in org.biopax.paxtools.model.level3

Subinterfaces of Interaction in org.biopax.paxtools.model.level3

Modifier and Type	Interface and Description
interface	BiochemicalReaction Definition: A conversion interaction in which one or more entities (substrates) undergo covalent changes to become one or more other entities (products).
interface	Catalysis Definition: A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy.
interface	ComplexAssembly Definition: A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.
interface	Control Definition: An interaction in which one entity regulates, modifies, or otherwise influences a continuant entity, i.e.
interface	Conversion Definition: An interaction in which molecules of one or more PhysicalEntity pools are physically transformed and become a member of one or more other PhysicalEntity pools.
interface	Degradation Definition: A conversion in which a pool of macromolecules are degraded into their elementary units.
interface	GeneticInteraction Definition : Genetic interactions between genes occur when two genetic perturbations (e.g.
interface	Modulation Definition: An interaction in which one entity regulates, modifies, or otherwise influences another.
interface	MolecularInteraction Definition: An interaction in which at least one participant is a physical entity, e.g.
interface	TemplateReaction
interface	TemplateReactionRegulation
interface	Transport
interface	TransportWithBiochemicalReaction

Methods in org.biopax.paxtools.model.level3 that return types with arguments of type Interaction

Modifier and Type	Method and Description
Set<Interaction>	Entity.getParticipantOf() This method returns the interaction that this entity/pep takes part in.