org.biopax.paxtools.util

Class BiopaxSafeSet<E extends BioPAXElement>

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractSet<E>

org.biopax.paxtools.util.BiopaxSafeSet<E>

All Implemented Interfaces:

Iterable<E>, Collection<E>, Set<E>

public class BiopaxSafeSet<E extends BioPAXElement>
extends AbstractSet<E>

A thread-safe set of BioPAX objects that also prevents adding several elements having the same URI. It also allows to quickly get a BioPAX object by URI. This set is used internally by all multiple cardinality BioPAX object property and inverse property implementations (since v4.2, 2013).

Author:

rodche

Constructor Summary

Constructors

Constructor and Description
BiopaxSafeSet()

Method Summary

Modifier and Type	Method and Description
boolean	add(E bpe)
boolean	contains(Object o)
E	get(String uri) Gets a BioPAX element by URI.
Iterator<E>	iterator()
int	size()

Methods inherited from class java.util.AbstractSet

equals, hashCode, removeAll

Methods inherited from class java.util.AbstractCollection

addAll, clear, containsAll, isEmpty, remove, retainAll, toArray, toArray, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Set

addAll, clear, containsAll, isEmpty, remove, retainAll, spliterator, toArray, toArray

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Constructor Detail

BiopaxSafeSet

public BiopaxSafeSet()

Method Detail

iterator

public Iterator<E> iterator()

Specified by:

iterator in interface Iterable<E extends BioPAXElement>

Specified by:

iterator in interface Collection<E extends BioPAXElement>

Specified by:

iterator in interface Set<E extends BioPAXElement>

Specified by:

iterator in class AbstractCollection<E extends BioPAXElement>

size

public int size()

Specified by:

size in interface Collection<E extends BioPAXElement>

Specified by:

size in interface Set<E extends BioPAXElement>

Specified by:

size in class AbstractCollection<E extends BioPAXElement>

add

public boolean add(E bpe)

Specified by:

add in interface Collection<E extends BioPAXElement>

Specified by:

add in interface Set<E extends BioPAXElement>

Overrides:

add in class AbstractCollection<E extends BioPAXElement>

contains

public boolean contains(Object o)

Specified by:

contains in interface Collection<E extends BioPAXElement>

Specified by:

contains in interface Set<E extends BioPAXElement>

Overrides:

contains in class AbstractCollection<E extends BioPAXElement>

get

public E get(String uri)

Gets a BioPAX element by URI.

Parameters:

uri - absolute URI of a BioPAX individual

Returns:

BioPAX object or null