org.biopax.paxtools.impl.level3

Class XrefImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XrefImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, Level3Element, UtilityClass, Xref

Direct Known Subclasses:

PublicationXrefImpl, RelationshipXrefImpl, UnificationXrefImpl

@Entity
public abstract class XrefImpl
extends L3ElementImpl
implements Xref

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor and Description
XrefImpl() Constructor.

Method Summary

Modifier and Type	Method and Description
int	equivalenceCode() If two elements are equivalent, then their equivalence code should be the same.
String	getDb()
String	getDbVersion()
String	getId()
String	getIdVersion()
String	getIdx()
Set<XReferrable>	getXrefOf()
protected boolean	semanticallyEquivalent(BioPAXElement other)
void	setDb(String db)
void	setDbVersion(String dbVersion)
void	setId(String id)
void	setIdVersion(String idVersion)
void	setIdx(String id)
protected void	setXrefOf(Set<XReferrable> xrefOf)
String	toString()

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

getAnnotations, getModelInterface, getRDFId, isEquivalent

Constructor Detail

XrefImpl

public XrefImpl()

Constructor.

Method Detail

semanticallyEquivalent

protected boolean semanticallyEquivalent(BioPAXElement other)

Overrides:

semanticallyEquivalent in class BioPAXElementImpl

equivalenceCode

public int equivalenceCode()

Description copied from interface: BioPAXElement

If two elements are equivalent, then their equivalence code should be the same.

Specified by:

equivalenceCode in interface BioPAXElement

Overrides:

equivalenceCode in class BioPAXElementImpl

Returns:

an integer that is same across all equivalent entities.

getDb

@Field(name="xrefdb",
       analyze=YES)
public String getDb()

Specified by:

getDb in interface Xref

setDb

public void setDb(String db)

Specified by:

setDb in interface Xref

getDbVersion

public String getDbVersion()

Specified by:

getDbVersion in interface Xref

setDbVersion

public void setDbVersion(String dbVersion)

Specified by:

setDbVersion in interface Xref

getIdVersion

public String getIdVersion()

Specified by:

getIdVersion in interface Xref

setIdVersion

public void setIdVersion(String idVersion)

Specified by:

setIdVersion in interface Xref

getIdx

@Field(name="xrefid",
       analyze=YES)
 @Boost(value=1.100000023841858f)
public String getIdx()

setIdx

public void setIdx(String id)

getId

public String getId()

Specified by:

getId in interface Xref

setId

public void setId(String id)

Specified by:

setId in interface Xref

getXrefOf

public Set<XReferrable> getXrefOf()

Specified by:

getXrefOf in interface Xref

setXrefOf

protected void setXrefOf(Set<XReferrable> xrefOf)

toString

public String toString()

Overrides:

toString in class BioPAXElementImpl