org.biopax.paxtools.impl.level3

Class PublicationXrefImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XrefImpl

org.biopax.paxtools.impl.level3.PublicationXrefImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, Level3Element, PublicationXref, UtilityClass, Xref

@Entity
 @Indexed
public class PublicationXrefImpl
extends XrefImpl
implements PublicationXref

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor and Description
PublicationXrefImpl() Constructor.

Method Summary

Modifier and Type	Method and Description
void	addAuthor(String author)
void	addSource(String source)
void	addUrl(String url)
Set<String>	getAuthor()
Class<? extends PublicationXref>	getModelInterface() This method returns the actual model interface that a class implements.
Set<String>	getSource()
String	getTitle()
Set<String>	getUrl()
int	getYear()
void	removeAuthor(String author)
void	removeSource(String source)
void	removeUrl(String url)
protected boolean	semanticallyEquivalent(BioPAXElement other)
void	setAuthor(Set<String> author)
void	setSource(Set<String> source)
void	setTitle(String title)
void	setUrl(Set<String> url)
void	setYear(int year)

Methods inherited from class org.biopax.paxtools.impl.level3.XrefImpl

equivalenceCode, getDb, getDbVersion, getId, getIdVersion, getIdx, getXrefOf, setDb, setDbVersion, setId, setIdVersion, setIdx, setXrefOf, toString

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Xref

getDb, getDbVersion, getId, getIdVersion, getXrefOf, setDb, setDbVersion, setId, setIdVersion

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getRDFId, isEquivalent

Constructor Detail

PublicationXrefImpl

public PublicationXrefImpl()

Constructor.

Method Detail

getModelInterface

public Class<? extends PublicationXref> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.

getAuthor

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
 @FieldBridge(impl=SetStringBridge.class)
public Set<String> getAuthor()

Specified by:

getAuthor in interface PublicationXref

setAuthor

public void setAuthor(Set<String> author)

addAuthor

public void addAuthor(String author)

Specified by:

addAuthor in interface PublicationXref

removeAuthor

public void removeAuthor(String author)

Specified by:

removeAuthor in interface PublicationXref

getSource

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
 @FieldBridge(impl=SetStringBridge.class)
public Set<String> getSource()

Specified by:

getSource in interface PublicationXref

setSource

public void setSource(Set<String> source)

addSource

public void addSource(String source)

Specified by:

addSource in interface PublicationXref

removeSource

public void removeSource(String source)

Specified by:

removeSource in interface PublicationXref

getTitle

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
public String getTitle()

Specified by:

getTitle in interface PublicationXref

setTitle

public void setTitle(String title)

Specified by:

setTitle in interface PublicationXref

getUrl

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
 @FieldBridge(impl=SetStringBridge.class)
public Set<String> getUrl()

Specified by:

getUrl in interface PublicationXref

setUrl

public void setUrl(Set<String> url)

addUrl

public void addUrl(String url)

Specified by:

addUrl in interface PublicationXref

removeUrl

public void removeUrl(String url)

Specified by:

removeUrl in interface PublicationXref

getYear

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
public int getYear()

Specified by:

getYear in interface PublicationXref

setYear

public void setYear(int year)

Specified by:

setYear in interface PublicationXref

semanticallyEquivalent

protected boolean semanticallyEquivalent(BioPAXElement other)

Overrides:

semanticallyEquivalent in class XrefImpl