object GenotypeDataset extends Serializable

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  4. def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

    An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

    An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

    ds

    Called genotypes.

    sequences

    A dictionary describing the reference genome.

    samples

    The samples called.

    headerLines

    The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

  5. def apply(ds: Dataset[Genotype]): GenotypeDataset

    An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

    An genomic dataset containing genotypes called in a set of samples against a given reference genome, populated from a SQL Dataset.

    ds

    Called genotypes.

  6. def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

    An genomic dataset containing genotypes called in a set of samples against a given reference genome.

    An genomic dataset containing genotypes called in a set of samples against a given reference genome.

    rdd

    Called genotypes.

    sequences

    A dictionary describing the reference genome.

    samples

    The samples called.

    headerLines

    The VCF header lines that cover all INFO/FORMAT fields needed to represent this genomic dataset of Genotypes.

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