object VariantDataset extends Serializable

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  4. def apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset

    An dataset containing variants called against a given reference genome.

    An dataset containing variants called against a given reference genome.

    ds

    Variants.

    sequences

    A dictionary describing the reference genome.

    headerLines

    The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Variants.

  5. def apply(ds: Dataset[Variant]): VariantDataset

    An dataset containing variants called against a given reference genome.

    An dataset containing variants called against a given reference genome.

    ds

    Variants.

  6. def apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset

    Builds a VariantDataset without a partition map.

    Builds a VariantDataset without a partition map.

    rdd

    The underlying Variant RDD.

    sequences

    The sequence dictionary for the RDD.

    headerLines

    The header lines for the RDD.

    returns

    A new Variant RDD.

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