object VariantDataset extends Serializable
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def
apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset
An dataset containing variants called against a given reference genome.
An dataset containing variants called against a given reference genome.
- ds
Variants.
- sequences
A dictionary describing the reference genome.
- headerLines
The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Variants.
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def
apply(ds: Dataset[Variant]): VariantDataset
An dataset containing variants called against a given reference genome.
An dataset containing variants called against a given reference genome.
- ds
Variants.
-
def
apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset
Builds a VariantDataset without a partition map.
Builds a VariantDataset without a partition map.
- rdd
The underlying Variant RDD.
- sequences
The sequence dictionary for the RDD.
- headerLines
The header lines for the RDD.
- returns
A new Variant RDD.
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