package java
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Type Members
- final class AlignmentRecordsToAlignmentRecordsConverter extends Function2[AlignmentRecordDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class AlignmentRecordsToContigsConverter extends Function2[AlignmentRecordDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class AlignmentRecordsToContigsDatasetConverter extends ToContigDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class AlignmentRecordsToCoverageConverter extends Function2[AlignmentRecordDataset, RDD[Coverage], CoverageDataset]
- final class AlignmentRecordsToCoverageDatasetConverter extends ToCoverageDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class AlignmentRecordsToFeaturesConverter extends Function2[AlignmentRecordDataset, RDD[Feature], FeatureDataset]
- final class AlignmentRecordsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class AlignmentRecordsToFragmentsConverter extends Function2[AlignmentRecordDataset, RDD[Fragment], FragmentDataset]
- final class AlignmentRecordsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class AlignmentRecordsToGenotypesConverter extends Function2[AlignmentRecordDataset, RDD[Genotype], GenotypeDataset]
- final class AlignmentRecordsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class AlignmentRecordsToVariantContextConverter extends Function2[AlignmentRecordDataset, RDD[VariantContext], VariantContextDataset]
- final class AlignmentRecordsToVariantsConverter extends Function2[AlignmentRecordDataset, RDD[Variant], VariantDataset]
- final class AlignmentRecordsToVariantsDatasetConverter extends ToVariantDatasetConversion[AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- final class ContigsToAlignmentRecordsConverter extends Function2[NucleotideContigFragmentDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class ContigsToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class ContigsToContigsConverter extends Function2[NucleotideContigFragmentDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class ContigsToCoverageConverter extends Function2[NucleotideContigFragmentDataset, RDD[Coverage], CoverageDataset]
- final class ContigsToCoverageDatasetConverter extends ToCoverageDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class ContigsToFeaturesConverter extends Function2[NucleotideContigFragmentDataset, RDD[Feature], FeatureDataset]
- final class ContigsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class ContigsToFragmentsConverter extends Function2[NucleotideContigFragmentDataset, RDD[Fragment], FragmentDataset]
- final class ContigsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class ContigsToGenotypesConverter extends Function2[NucleotideContigFragmentDataset, RDD[Genotype], GenotypeDataset]
- final class ContigsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class ContigsToVariantContextsConverter extends Function2[NucleotideContigFragmentDataset, RDD[VariantContext], VariantContextDataset]
- final class ContigsToVariantsConverter extends Function2[NucleotideContigFragmentDataset, RDD[Variant], VariantDataset]
- final class ContigsToVariantsDatasetConverter extends ToVariantDatasetConversion[NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- final class CoverageToAlignmentRecordsConverter extends Function2[CoverageDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class CoverageToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class CoverageToContigsConverter extends Function2[CoverageDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class CoverageToContigsDatasetConverter extends ToContigDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class CoverageToCoverageConverter extends Function2[CoverageDataset, RDD[Coverage], CoverageDataset]
- final class CoverageToFeaturesConverter extends Function2[CoverageDataset, RDD[Feature], FeatureDataset]
- final class CoverageToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class CoverageToFragmentsConverter extends Function2[CoverageDataset, RDD[Fragment], FragmentDataset]
- final class CoverageToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class CoverageToGenotypesConverter extends Function2[CoverageDataset, RDD[Genotype], GenotypeDataset]
- final class CoverageToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class CoverageToVariantContextConverter extends Function2[CoverageDataset, RDD[VariantContext], VariantContextDataset]
- final class CoverageToVariantsConverter extends Function2[CoverageDataset, RDD[Variant], VariantDataset]
- final class CoverageToVariantsDatasetConverter extends ToVariantDatasetConversion[Coverage, Coverage, CoverageDataset]
- final class FeaturesToAlignmentRecordsConverter extends Function2[FeatureDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class FeaturesToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[Feature, Feature, FeatureDataset]
- final class FeaturesToContigsConverter extends Function2[FeatureDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class FeaturesToContigsDatasetConverter extends ToContigDatasetConversion[Feature, Feature, FeatureDataset]
- final class FeaturesToCoverageConverter extends Function2[FeatureDataset, RDD[Coverage], CoverageDataset]
- final class FeaturesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Feature, Feature, FeatureDataset]
- final class FeaturesToFeatureConverter extends Function2[FeatureDataset, RDD[Feature], FeatureDataset]
- final class FeaturesToFragmentsConverter extends Function2[FeatureDataset, RDD[Fragment], FragmentDataset]
- final class FeaturesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Feature, Feature, FeatureDataset]
- final class FeaturesToGenotypesConverter extends Function2[FeatureDataset, RDD[Genotype], GenotypeDataset]
- final class FeaturesToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Feature, Feature, FeatureDataset]
- final class FeaturesToVariantContextConverter extends Function2[FeatureDataset, RDD[VariantContext], VariantContextDataset]
- final class FeaturesToVariantsConverter extends Function2[FeatureDataset, RDD[Variant], VariantDataset]
- final class FeaturesToVariantsDatasetConverter extends ToVariantDatasetConversion[Feature, Feature, FeatureDataset]
- final class FragmentsToAlignmentRecordsConverter extends Function2[FragmentDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class FragmentsToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class FragmentsToContigsConverter extends Function2[FragmentDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class FragmentsToContigsDatasetConverter extends ToContigDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class FragmentsToCoverageConverter extends Function2[FragmentDataset, RDD[Coverage], CoverageDataset]
- final class FragmentsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class FragmentsToFeaturesConverter extends Function2[FragmentDataset, RDD[Feature], FeatureDataset]
- final class FragmentsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class FragmentsToFragmentsConverter extends Function2[FragmentDataset, RDD[Fragment], FragmentDataset]
- final class FragmentsToGenotypesConverter extends Function2[FragmentDataset, RDD[Genotype], GenotypeDataset]
- final class FragmentsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class FragmentsToVariantContextConverter extends Function2[FragmentDataset, RDD[VariantContext], VariantContextDataset]
- final class FragmentsToVariantsConverter extends Function2[FragmentDataset, RDD[Variant], VariantDataset]
- final class FragmentsToVariantsDatasetConverter extends ToVariantDatasetConversion[Fragment, Fragment, FragmentDataset]
- final class GenotypesToAlignmentRecordsConverter extends Function2[GenotypeDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class GenotypesToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[Genotype, Genotype, GenotypeDataset]
- final class GenotypesToContigsConverter extends Function2[GenotypeDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class GenotypesToContigsDatasetConverter extends ToContigDatasetConversion[Genotype, Genotype, GenotypeDataset]
- final class GenotypesToCoverageConverter extends Function2[GenotypeDataset, RDD[Coverage], CoverageDataset]
- final class GenotypesToCoverageDatasetConverter extends ToCoverageDatasetConversion[Genotype, Genotype, GenotypeDataset]
- final class GenotypesToFeaturesConverter extends Function2[GenotypeDataset, RDD[Feature], FeatureDataset]
- final class GenotypesToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Genotype, Genotype, GenotypeDataset]
- final class GenotypesToFragmentsConverter extends Function2[GenotypeDataset, RDD[Fragment], FragmentDataset]
- final class GenotypesToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Genotype, Genotype, GenotypeDataset]
- final class GenotypesToGenotypesConverter extends Function2[GenotypeDataset, RDD[Genotype], GenotypeDataset]
- final class GenotypesToVariantContextConverter extends Function2[GenotypeDataset, RDD[VariantContext], VariantContextDataset]
- final class GenotypesToVariantsConverter extends Function2[GenotypeDataset, RDD[Variant], VariantDataset]
- final class GenotypesToVariantsDatasetConverter extends ToVariantDatasetConversion[Genotype, Genotype, GenotypeDataset]
-
class
JavaADAMContext extends Serializable
The JavaADAMContext provides java-friendly functions on top of ADAMContext.
- trait ToAlignmentRecordDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
- trait ToContigDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
- trait ToCoverageDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Coverage, Coverage, CoverageDataset]
- trait ToFeatureDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Feature, Feature, FeatureDataset]
- trait ToFragmentDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Fragment, Fragment, FragmentDataset]
- trait ToGenotypeDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Genotype, Genotype, GenotypeDataset]
- trait ToVariantContextDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, VariantContext, VariantContext, VariantContextDataset]
- trait ToVariantDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Variant, Variant, VariantDataset]
- final class VariantContextsToAlignmentRecordsConverter extends Function2[VariantContextDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class VariantContextsToContigsConverter extends Function2[VariantContextDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class VariantContextsToCoverageConverter extends Function2[VariantContextDataset, RDD[Coverage], CoverageDataset]
- final class VariantContextsToFeaturesConverter extends Function2[VariantContextDataset, RDD[Feature], FeatureDataset]
- final class VariantContextsToFragmentsConverter extends Function2[VariantContextDataset, RDD[Fragment], FragmentDataset]
- final class VariantContextsToGenotypesConverter extends Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset]
- final class VariantContextsToVariantContextConverter extends Function2[VariantContextDataset, RDD[VariantContext], VariantContextDataset]
- final class VariantContextsToVariantsConverter extends Function2[VariantContextDataset, RDD[Variant], VariantDataset]
- final class VariantsToAlignmentRecordsConverter extends Function2[VariantDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
- final class VariantsToAlignmentRecordsDatasetConverter extends ToAlignmentRecordDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToContigsConverter extends Function2[VariantDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
- final class VariantsToContigsDatasetConverter extends ToContigDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToCoverageConverter extends Function2[VariantDataset, RDD[Coverage], CoverageDataset]
- final class VariantsToCoverageDatasetConverter extends ToCoverageDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToFeaturesConverter extends Function2[VariantDataset, RDD[Feature], FeatureDataset]
- final class VariantsToFeaturesDatasetConverter extends ToFeatureDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToFragmentsConverter extends Function2[VariantDataset, RDD[Fragment], FragmentDataset]
- final class VariantsToFragmentsDatasetConverter extends ToFragmentDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToGenotypesConverter extends Function2[VariantDataset, RDD[Genotype], GenotypeDataset]
- final class VariantsToGenotypesDatasetConverter extends ToGenotypeDatasetConversion[Variant, Variant, VariantDataset]
- final class VariantsToVariantContextConverter extends Function2[VariantDataset, RDD[VariantContext], VariantContextDataset]
- final class VariantsToVariantsConverter extends Function2[VariantDataset, RDD[Variant], VariantDataset]
Value Members
- object JavaADAMContext extends Serializable