object Timers extends Metrics
Contains Timers that are used to instrument ADAM.
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- val BQSRInDriver: Timer
- val BroadcastJoinAndGroupByRight: Timer
- val BroadcastingKnownSnps: Timer
- val BuildingTrees: Timer
- val CheckingForMask: Timer
- val CollectingSnps: Timer
- val ComputeCovariates: Timer
- val ComputeQualityScore: Timer
- val ComputingCycleCovariate: Timer
- val ComputingDinucCovariate: Timer
- val ComputingOriginalScores: Timer
- val ConvertToSAM: Timer
- val ConvertToSAMRecord: Timer
- val CreateIndelRealignmentTargets: Timer
- val CreateReferencePositionPair: Timer
- val CreatingKnownSnpsTable: Timer
- val CreatingRecalibrationTable: Timer
- val FinalizingRealignments: Timer
- val FindTargets: Timer
- val FullOuterShuffleJoin: Timer
- val GetExtraValues: Timer
- val GetReferenceFromFile: Timer
- val GetReferenceFromReads: Timer
- val GrowingTrees: Timer
- val InnerBroadcastJoin: Timer
- val InnerShuffleJoin: Timer
- val InvertingRecalibrationTable: Timer
- val JoinTargets: Timer
- val LeftOuterShuffleJoin: Timer
- val LoadAlignments: Timer
- val LoadBam: Timer
- val LoadBed: Timer
- val LoadContigFragments: Timer
- val LoadCoverage: Timer
- val LoadFasta: Timer
- val LoadFastq: Timer
- val LoadFeatures: Timer
- val LoadFragments: Timer
- val LoadGenotypes: Timer
- val LoadGff3: Timer
- val LoadGtf: Timer
- val LoadIndexedBam: Timer
- val LoadIndexedVcf: Timer
- val LoadInterleavedFastq: Timer
- val LoadInterleavedFastqFragments: Timer
- val LoadIntervalList: Timer
- val LoadNarrowPeak: Timer
- val LoadPairedFastq: Timer
- val LoadPairedFastqFragments: Timer
- val LoadParquet: Timer
- val LoadReferenceFile: Timer
- val LoadSequenceDictionary: Timer
- val LoadUnpairedFastq: Timer
- val LoadVariants: Timer
- val LoadVcf: Timer
- val MapTargets: Timer
- val MarkDuplicatesInDriver: Timer
- val MarkReads: Timer
- val ObservationAccumulatorComb: Timer
- val ObservationAccumulatorSeq: Timer
- val ObservingRead: Timer
- val PerformDuplicateMarking: Timer
- val QueryingRecalibrationTable: Timer
- val ReadCovariates: Timer
- val ReadResidues: Timer
- val RealignIndelsInDriver: Timer
- val RealignTargetGroup: Timer
- val RecalibrateRead: Timer
- val RightOuterBroadcastJoin: Timer
- val RightOuterBroadcastJoinAndGroupByRight: Timer
- val RightOuterShuffleJoin: Timer
- val RightOuterShuffleJoinAndGroupByLeft: Timer
- val RunningMapSideJoin: Timer
- val SAMSave: Timer
- val SaveAsADAM: Timer
- val SaveAsVcf: Timer
- val ScoreAndMarkReads: Timer
- val ShuffleJoinAndGroupByLeft: Timer
- val SortByIndex: Timer
- val SortReads: Timer
- val SortTargets: Timer
- val SortingRightSide: Timer
- val SweepReadOverReferenceForQuality: Timer
- val SweepReadsOverConsensus: Timer
- val TreeJoin: Timer
- val TrimCigar: Timer
- val TrimLowQualityInDriver: Timer
- val TrimMDTag: Timer
- val TrimRead: Timer
- val TrimReadsInDriver: Timer
- val WriteADAMRecord: Timer
- val WriteBAMRecord: Timer
- val WriteCRAMRecord: Timer
- val WriteSAMRecord: Timer
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val
clock: Clock
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def
timer(name: String): Timer
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def
toString(): String
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