Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written.
Hadoop configuration path to check for a boolean value indicating whether the current or original read qualities should be written. True indicates to write the original qualities. The default is false.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair.
Hadoop configuration path to check for a boolean value indicating whether to write the "/1" "/2" suffixes to the read name that indicate whether a read is first or second in a pair. Default is false (no suffixes).
Builds an AlignmentRecordDataset without a partition map from a Dataset.
Builds an AlignmentRecordDataset without a partition map from a Dataset.
The underlying AlignmentRecord Dataset.
The sequence dictionary for the genomic dataset.
The read group dictionary for the genomic dataset.
A new AlignmentRecordDataset.
Builds an AlignmentRecordDataset without a partition map from an RDD.
Builds an AlignmentRecordDataset without a partition map from an RDD.
The underlying AlignmentRecord RDD.
The sequence dictionary for the genomic dataset.
The read group dictionary for the genomic dataset.
A new AlignmentRecordDataset.
Builds an AlignmentRecordDataset for unaligned reads.
Builds an AlignmentRecordDataset for unaligned reads.
The underlying AlignmentRecord RDD.
A new AlignmentRecordDataset.