Object/Class

org.bdgenomics.adam.rdd.variant

VariantDataset

Related Docs: class VariantDataset | package variant

Permalink

object VariantDataset extends Serializable

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. VariantDataset
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. def apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset

    Permalink

    An dataset containing variants called against a given reference genome.

    An dataset containing variants called against a given reference genome.

    ds

    Variants.

    sequences

    A dictionary describing the reference genome.

    headerLines

    The VCF header lines that cover all INFO/FORMAT fields needed to represent this RDD of Variants.

  5. def apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset

    Permalink

    Builds a VariantDataset without a partition map.

    Builds a VariantDataset without a partition map.

    rdd

    The underlying Variant RDD.

    sequences

    The sequence dictionary for the RDD.

    headerLines

    The header lines for the RDD.

    returns

    A new Variant RDD.

  6. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  7. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  10. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  12. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  15. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  16. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  18. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  19. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped