OutFormatter that reads streaming BED format.
An RDD containing Coverage data.
A GenomicRDD that wraps Feature data.
A GenomicRDD that wraps Feature data.
An RDD of genomic Features.
The reference genome this data is aligned to.
OutFormatter that reads streaming GFF3 format.
OutFormatter that reads streaming GTF format.
OutFormatter that reads streaming NarrowPeak format.
InFormatter companion that builds a BEDInFormatter to write features in BED format to a pipe.
InFormatter companion that builds a GFF3InFormatter to write features in GFF3 format to a pipe.
InFormatter companion that builds a GTFInFormatter to write features in GTF format to a pipe.
InFormatter companion that builds a NarrowPeakInFormatter to write features in NarrowPeak format to a pipe.
An RDD containing Coverage data.
An RDD containing data describing how many reads cover a genomic locus/region.
A dictionary describing the reference genome.